CI01000004_08243282_08245264


Basic Information

Item Value
gene id CI01000004_08243282_08245264
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8242979 ~ 8245369 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08243282_08245264.mRNA
AAATATAATGCAGGAGATTCACTTCACTTTGTTTGAAACACTGATGATTTTCCAGCATATTTCTATGCAAATTTTGGGATATTGCATAAAATGCTGGATTGAGACACCATGATGCAAATAAAATTTCCAAAATTTAAGAATACTTTTATTTATGTTTTATGATTGAACCAAGTCATGTGACTAAATAATTGACTTAGATGATTGACATCTACCATCAGTCACTAATAAACATGAAGTTCTTCAGAGTGTTTTGTAATTTATTACAATTAATGAAAGATCTAAAGTTGCACCTTGAGTTGAAACATGGCTGTTAAGCTCATTTGTATATTCTGCTTCACTCGTTTTCAGTCACTACAATTGAGTCATCTGAGAACTTCTGCGGGCGGCATAACTTATTTTACAGGTGATTCCCTGTACTTCAATGCTGAAGTGTTGGGCATGAAGAGGGAAAGAGATCCTATCCCCATTGGGCCCTTGGGCTACTTCTCGGTGTATTTGTACAAGACCATTGCAAGGTTGACGGACTCCCGCCGATGGACTTTCAAAAGCATCAATGCTCTTCAAAGAGTCTTGGTGCCTCTGTCAATAGCTGTAATTTTGGGGGAGTCTGTCAGCCAACTACTGACTACGGAAGCTGGCTGGCATGTGACAGGACGTACTGGACAAGAACCTGTGCAATTCAGCACAAGATCTGGAGAACTAGTCTTTGCACCACAGGGAGACTCTAGCAGGGAAGGAAAGCCATTGGTAGACACAGCAAAACAAAACACAACAGTACAGTGAAGCCCTTAGCAACAGCGCTAAGCTGTTACACACACCTTACTGAGAACTCTTGATGGATTTGAGGAGGAAGAAATGAGCAGTGTAGCATTTCGAACAACGAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08243282_08245264.mRNA True 888 mRNA 0.40 4 8242979 8245369

Neighbor

gene id symbol gene type direction distance location
CI01000004_08200962_08208539 PPP2R3A coding upstream 32275 8199371 ~ 8210704 (+)
CI01000004_08177656_08183324 PPP2R3A coding upstream 59384 8177565 ~ 8183595 (+)
CI01000004_08108419_08111331 MSL2A coding upstream 131313 8107726 ~ 8111666 (+)
CI01000004_08081989_08097935 STAG1, STAG1A, STAG1B coding upstream 144225 8081704 ~ 8098754 (+)
CI01000004_08015521_08017006 NA coding upstream 225965 8015297 ~ 8017014 (+)
CI01000004_08252556_08257067 NA coding downstream 7025 8252394 ~ 8258093 (+)
CI01000004_08302613_08354790 FNDC3BA coding downstream 57244 8302613 ~ 8354795 (+)
CI01000004_08382042_08402126 PLD1A coding downstream 135103 8380472 ~ 8402514 (+)
CI01000004_08414451_08436256 NA coding downstream 168947 8414316 ~ 8439933 (+)
CI01000004_08458998_08503889 TNIK, TNIKA coding downstream 213629 8458998 ~ 8503992 (+)
G28801 NA non-coding upstream 209267 8028250 ~ 8033712 (+)
G28800 NA non-coding upstream 217081 8025491 ~ 8025898 (+)
G28797 NA non-coding upstream 259202 7983481 ~ 7983777 (+)
G28791 NA non-coding upstream 415297 7827368 ~ 7827682 (+)
G28790 NA non-coding upstream 420962 7821817 ~ 7822017 (+)
G28819 NA non-coding downstream 31833 8277202 ~ 8284097 (+)
G28834 NA non-coding downstream 120326 8365695 ~ 8365921 (+)
G28835 NA non-coding downstream 123492 8368861 ~ 8369073 (+)
G28843 NA non-coding downstream 165357 8410726 ~ 8411220 (+)
G28848 NA non-coding downstream 225376 8470745 ~ 8471884 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 586596 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1668558 6570771 ~ 6572667 (+)
G28302 NA other upstream 1740892 6470028 ~ 6502087 (+)
G28165 NA other upstream 2509978 5732589 ~ 5733001 (+)
G27805 NA other upstream 2869176 5372825 ~ 5373803 (+)
G28859 NA other downstream 353866 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 731069 8976254 ~ 8980984 (+)
G30797 NA other downstream 2252007 10497376 ~ 10497788 (+)
G31710 NA other downstream 3391882 11637251 ~ 11642400 (+)

Expression


Co-expression Network