CI01000004_15836936_15841048


Basic Information

Item Value
gene id CI01000004_15836936_15841048
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15836462 ~ 15841829 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15836936_15841048.mRNA
AAAGGGTGAAAGTAGCCTTTTCAGCCTCACTGTCAGCTTCAACAATTTTATCATGGCTTCAGGTCTTCAATCCTTATGCCATATCGACTGCTTTAATGCTCAATGTGGTGGCTATACCAGCAGATGATTTATTTTCACCAAACATAAACATCCTTGAAGAACTGGGGAAGATGAAGATCATGGAAACAAGGATGGAATCTATGGAGAAGGAAATGGAGCGACTAAGAACAGAAAACACAGCACAAGCAAAGAAGCTGGAGGAGTTTCATGTTACAATGAATGACAGAAAGATCAAAATGGATGAACTAATTAAACAAAATGAAGCTCAAGCAAAAGAACTAGACACCTTGCGTGGAACAACAAATGACGTAAAGATCAAAATGGATGATCTAATAAAACAAAGTGAAGTTTCAAAAGTGGCTTTCTCAGTTTCTCTCTCGTCCTCTAATGGACCGCACAGCACTTTACAAACCCTGATTTACAAACACATCTTCCTCAATAATGGAGACGCTTATGATGCAAATACAGGAATCTTCACAGCACCCATGAAGGGAGTGTATGTATTCAGGGTTTTCTCTAAGGCCTATGGAAGTTCAGATAAAGCGGTTGTCGCAGGCTTGTTTAGGAACGACCAGCATGAAATTTCTACATATGCACGTCAAAATGGTGGTTTTATCGGCTCTTCAAATGGAGTTTCTCTGCTGCTGGAAAAGGGGGATAAAATATGTGTAAATCTCTATCCTGGATATTGGATTTTTGACAATGAACACCATCACAGCACCTTTAGTGGACATCTGCTTTTCACCATGTGATCAGAACATACACAGCATCTTTGTACATCAAGACTGTAATCATAATACAAGATGTTCAATTCACATGATTTTTTTGTCTGTAAGACTACGAGTGAATGAATTTGATCAAATTTGATGCTGATACTTACTATGAATCACCTATGTTTACGACACCTACAGTAAACAAGGGCTTTCTCTAAAACCTTTGGAAATCAAAATAGGCCTTTATGGTAAATATATGGTAAAAGTACAATATGATTTCATTTTCACTGTATTGACGAGAACTTAAAAAAAAAAAAAATCCTGGTTTGTATATTAAATATCAACATCATGGTAGAGTTTTAGCAGTGTTACATGGTCATATATTTGACCCACATGTACATAAATGTGCTAACTGTAACCCATTTTATCAAAATAGTAAAACTTTGGGTGTCACATTATTCCATGATCTAATGATCTTTTACTGTTTTCTGGAGTTCATTCAACATCAATAAA
>TU39496
AAAACGGGGACTATTTACATGAAATGCGAGTCTTTTCAGCAGCTCTGTTAATATCGATGAGCCTCAGACTATCAACACTCATTAACAAGTCATTCAGGATCATCAGCAGATCATTTCACTTTATTAGTTTTAATTAAGTTTTATCTAACCATTAGGCCACAACTGCCCAATCTAATAATTTAGACTCCACCCATATGTGACATCATTTACCAAAAATGACATCATTTTAGGTCTCTTAAACACACTTTTCAATGAAAACTCTGTTTACAAAAAGGGAAGATTAAATATTTGTAGTCCAATGTCTATAAATGTTATTAGGTTTTTGTGAGGCTACAGGAAATCGATCATAATCACGTAGAACAGCAGTGATGAATTAGTGTAGTTTTACTGTTGTGTGGAGCCACATTGTATATCACCGACATCAGACATCCTTTGCAAAGTCAAAAAGATGATGGAAACGTTAAATGCTCTTAATGACGAAGTCAGGGAACTACAAAGCAAAAATGAAGATACTGTAAAATGTTGTTATTATTATTATTATTATTATTTTTTTTAAACTGACTGACCACACGGGAGAGACTAGTTTGTTCCTTTGAGCAGAAAGCTTCATGGAATTATATAGTTTAGAGTGTTTGTTATCAATGTAGCACAGACTACAAGGCTAAACTTTAAAAAACACACAACAGTTCCAACAATAGCATTACAATGATTAAATGAAAAGATACTTGAAGATTCCTCTTTTTGCTTCCTTAATCACTTTCATCTCATCTCTTTTTTGCAGAAAGGGTGAAAGTAGCCTTTTCAGCCTCACTGTCAGCTTCAACAATTTTATCATGGCTTCAGGTCTTCAATCCTTATGCCATATCGACTGGTGTGAGACTGCTAAAGAACAGCAATCTTGTGGTCGCAGCATCAGATAACAAAATGCCATATTCTATTGATTTTTTGAAAATATAATCCAGCACTATTAGGTTTTTTTTAAATCAGCTACGTCAATCTGGAAATTCCAAGTGGCTTAAACC

Function

NR:

description
Si:rp71-1g18.7 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15836936_15841048.mRNA False 1286 mRNA 0.36 6 15836462 15841048
TU39496 True 1022 lncRNA 0.34 1 15840808 15841829

Neighbor

gene id symbol gene type direction distance location
CI01000004_15832789_15836192 NA coding downstream 258 15832573 ~ 15836231 (-)
CI01000004_15827737_15828938 NA coding downstream 7502 15827668 ~ 15828960 (-)
CI01000004_15760841_15761919 HBL4 coding downstream 74475 15760790 ~ 15761987 (-)
CI01000004_15751774_15753519 NA coding downstream 81065 15751733 ~ 15755397 (-)
CI01000004_15726420_15733105 NA coding downstream 103357 15726052 ~ 15733105 (-)
CI01000004_15881212_15881809 NA coding upstream 39815 15880140 ~ 15883692 (-)
CI01000004_15911104_15915972 NA coding upstream 69888 15910936 ~ 15916019 (-)
CI01000004_15922924_15923872 NA coding upstream 81678 15922726 ~ 15923872 (-)
CI01000004_15956601_15962195 TOX4 coding upstream 114952 15956000 ~ 15962930 (-)
CI01000004_15965178_15990162 CHD8 coding upstream 124072 15965120 ~ 15990175 (-)
G34787 NA non-coding downstream 11361 15824811 ~ 15825101 (-)
G34786 NA non-coding downstream 13377 15822702 ~ 15823085 (-)
G34783 NA non-coding downstream 16504 15819749 ~ 15819958 (-)
G34785 NA non-coding downstream 19090 15816835 ~ 15817372 (-)
G34784 NA non-coding downstream 22555 15813029 ~ 15813907 (-)
G34790 NA non-coding upstream 1253 15842301 ~ 15842864 (-)
G34792 NA non-coding upstream 5919 15846967 ~ 15847928 (-)
G34793 NA non-coding upstream 8535 15849583 ~ 15849826 (-)
G34794 NA non-coding upstream 10216 15851264 ~ 15851868 (-)
G34799 NA non-coding upstream 36220 15877268 ~ 15877750 (-)
G34633 NA other downstream 48565 15787386 ~ 15787897 (-)
G34718 NA other downstream 554813 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 746104 15086671 ~ 15087575 (-)
G34668 NA other downstream 783687 15051176 ~ 15052775 (-)
G34796 NA other upstream 19565 15860613 ~ 15863748 (-)
G34934 NA other upstream 560697 16401745 ~ 16421506 (-)
G34982 NA other upstream 661677 16502725 ~ 16515974 (-)
G34995 NA other upstream 688394 16529442 ~ 16533008 (-)
G34999 NA other upstream 696147 16537195 ~ 16541278 (-)

Expression


Co-expression Network