G34792


Basic Information

Item Value
gene id G34792
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15846967 ~ 15847928 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39499
TGAACGGCTTGTGTCCAGTATGAACTCTCATGTGAAGCTCAAGACTTTGTTTGTTTGAGAATCTCTTTTCACACTGTTCACATTTGAATGGCTTCTCCCCTGTGTGGATTCTCATGTGAATCCGAAGACTTAGTTTGTATGGGAAACTCTTTCCACATTGATCACATGTGAACGGTCTCTCTCCGGTATGAACTCTCATGTGACGCTCAAGACTGCTTTTGTTTGGGAATCTCTTTTCACACTGATCACACTTGAACGGCTTCTCTCCGGTGTGGATTCTCCTGTGAGCCTGAAGATTTTGTTTGTTTGGGAAACTGCTTCCACATTGATCACATGCATGCAGATTCTCTTCAGTGTGGATCTTCATGTGTTGATTAAGATTTCTTTTTTGTTTGAAACTCTTCCCACATTGATCACATGTGTACGGCTTCTCTTCAGTATGAACTTTCATGTGAAGCTCAAGACATTGTTTGTTTAAGAATCTCTTTTCACACTGATCACACATGTACGGCTTCTCTCCAGTGTGGATTCTCATGTGAAGCTTAAGGCTCGATGTGTCTGTGAAACTCTTTCCACATTGATCACATGTGAACGGCTTCTCTCCGGTGTGGATCATCATGTGTCTTTTCAGGTGTGCTGATTGCGTGAAACTCTTCCCACATTGATCACACTTGAAAGGCTTCTCTCCAGTGTGAACTCTCATGTGACACTCAAGATGCTGTTTGTGTGTGAAACTCATGCCACACTGATCACATGATTCCGGTTTTTCTCCGGTGTGGATCCTCATGTGTCCTTTAAGGTGTATTTTTTGTGTGAAGCTCTTCCCACACTGAGTGCAGGGGAAAGATTTATTGGCTCTTCTTTTCTTTAAAAATGTCTTTTTAGTCTTTGAGCGACTTTTTTCTCCATATTTAAAAAGATGATTCTCCTCCACTTCACTCAGTTCTTCACTCTCCATGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39499 True 962 lncRNA 0.51 1 15846967 15847928

Neighbor

gene id symbol gene type direction distance location
CI01000004_15836936_15841048 NA coding downstream 5919 15836462 ~ 15841829 (-)
CI01000004_15832789_15836192 NA coding downstream 10763 15832573 ~ 15836231 (-)
CI01000004_15827737_15828938 NA coding downstream 18007 15827668 ~ 15828960 (-)
CI01000004_15760841_15761919 HBL4 coding downstream 84980 15760790 ~ 15761987 (-)
CI01000004_15751774_15753519 NA coding downstream 91570 15751733 ~ 15755397 (-)
CI01000004_15881212_15881809 NA coding upstream 32935 15880140 ~ 15883692 (-)
CI01000004_15911104_15915972 NA coding upstream 63008 15910936 ~ 15916019 (-)
CI01000004_15922924_15923872 NA coding upstream 74798 15922726 ~ 15923872 (-)
CI01000004_15956601_15962195 TOX4 coding upstream 108072 15956000 ~ 15962930 (-)
CI01000004_15965178_15990162 CHD8 coding upstream 117192 15965120 ~ 15990175 (-)
G34790 NA non-coding downstream 4103 15842301 ~ 15842864 (-)
G34787 NA non-coding downstream 21866 15824811 ~ 15825101 (-)
G34786 NA non-coding downstream 23882 15822702 ~ 15823085 (-)
G34783 NA non-coding downstream 27009 15819749 ~ 15819958 (-)
G34793 NA non-coding upstream 1655 15849583 ~ 15849826 (-)
G34794 NA non-coding upstream 3336 15851264 ~ 15851868 (-)
G34799 NA non-coding upstream 29340 15877268 ~ 15877750 (-)
G34801 NA non-coding upstream 39209 15887137 ~ 15887413 (-)
G34633 NA other downstream 59070 15787386 ~ 15787897 (-)
G34718 NA other downstream 565318 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 756609 15086671 ~ 15087575 (-)
G34668 NA other downstream 794192 15051176 ~ 15052775 (-)
G34796 NA other upstream 12685 15860613 ~ 15863748 (-)
G34934 NA other upstream 553817 16401745 ~ 16421506 (-)
G34982 NA other upstream 654797 16502725 ~ 16515974 (-)
G34995 NA other upstream 681514 16529442 ~ 16533008 (-)
G34999 NA other upstream 689267 16537195 ~ 16541278 (-)

Expression


Co-expression Network