Gene
RNA
| Item | Value |
|---|---|
| gene id | G34801 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15887137 ~ 15887413 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU39509 | True | 277 | lncRNA | 0.45 | 1 | 15887137 | 15887413 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_15881212_15881809 | NA | coding | downstream | 3445 | 15880140 ~ 15883692 (-) |
| CI01000004_15836936_15841048 | NA | coding | downstream | 46089 | 15836462 ~ 15841829 (-) |
| CI01000004_15832789_15836192 | NA | coding | downstream | 50933 | 15832573 ~ 15836231 (-) |
| CI01000004_15827737_15828938 | NA | coding | downstream | 58177 | 15827668 ~ 15828960 (-) |
| CI01000004_15760841_15761919 | HBL4 | coding | downstream | 125150 | 15760790 ~ 15761987 (-) |
| CI01000004_15911104_15915972 | NA | coding | upstream | 23523 | 15910936 ~ 15916019 (-) |
| CI01000004_15922924_15923872 | NA | coding | upstream | 35313 | 15922726 ~ 15923872 (-) |
| CI01000004_15956601_15962195 | TOX4 | coding | upstream | 68587 | 15956000 ~ 15962930 (-) |
| CI01000004_15965178_15990162 | CHD8 | coding | upstream | 77707 | 15965120 ~ 15990175 (-) |
| CI01000004_15991836_15995032 | CBLN12, CBLN3, CBLN1 | coding | upstream | 104227 | 15991640 ~ 15995184 (-) |
| G34799 | NA | non-coding | downstream | 9387 | 15877268 ~ 15877750 (-) |
| G34794 | NA | non-coding | downstream | 35269 | 15851264 ~ 15851868 (-) |
| G34793 | NA | non-coding | downstream | 37311 | 15849583 ~ 15849826 (-) |
| G34792 | NA | non-coding | downstream | 39209 | 15846967 ~ 15847928 (-) |
| G34616 | NA | non-coding | upstream | 19500 | 15906913 ~ 15910671 (-) |
| G34811 | NA | non-coding | upstream | 38597 | 15926010 ~ 15926261 (-) |
| G34814 | NA | non-coding | upstream | 41030 | 15928443 ~ 15928750 (-) |
| G34583 | NA | non-coding | upstream | 42962 | 15930375 ~ 15944664 (-) |
| G34830 | NA | non-coding | upstream | 111406 | 15998819 ~ 15999147 (-) |
| G34796 | NA | other | downstream | 23389 | 15860613 ~ 15863748 (-) |
| G34633 | NA | other | downstream | 99240 | 15787386 ~ 15787897 (-) |
| G34718 | NA | other | downstream | 605488 | 15281016 ~ 15281649 (-) |
| CI01000004_15086759_15087492 | NA | other | downstream | 796779 | 15086671 ~ 15087575 (-) |
| G34934 | NA | other | upstream | 514332 | 16401745 ~ 16421506 (-) |
| G34982 | NA | other | upstream | 615312 | 16502725 ~ 16515974 (-) |
| G34995 | NA | other | upstream | 642029 | 16529442 ~ 16533008 (-) |
| G34999 | NA | other | upstream | 649782 | 16537195 ~ 16541278 (-) |
| CI01000004_16596848_16599652 | NA | other | upstream | 691254 | 16596476 ~ 16601205 (-) |
