CI01000004_15930478_15944692


Basic Information

Item Value
gene id CI01000004_15930478_15944692
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15930478 ~ 15944744 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15930478_15944692.mRNA
ATGAAGTGGAACCTAGTGTTCCTTGGGCTCCTTCTGACCTTCGGGCAGCTGTCATGGGGCCAGAAAGGTATGGACATCCCTGAGTACGATGGAAAGGACCGCGTTCACGAGCTTAATGCCAAGAATTACAAGTCTGTGATGAAGAAATATGACGTGATGGTGGTGTACTACCATGAGCACGTAGGATCCAGCAGAGTCGCCCAGAAACAGTTTCAGATTGAGGAGCTGGCCCTTGAGGAATGCAAGGGCATTTATTTCATTTGTTTCAGATGTTTGGAGAAATGGTTTTGTGCACCTGTCACCACCCCAGCACCCTGTTACTCCGGCTCAGCAGGCACATGTAGCTCTGCGATTGGTGGAGACATCTGTCCATCATACAGGGTCAAGTTTCACACCGATTTAGAAAGTGCAGGGGCAGCGCTCCTGATGATGGCTTTTATGGATCTTGCTGCACAAGTCCTGGAGGATCTTGACGACGAGGACATCGGGATTGGCCTACTCGATGAGAAGACAGACAGAGCTGTTGCCAAGAAACTAGGTCTTGATGAGGCTGACAGTATCTATATCTTCTTTGAGGATGAGGTCATTGAGTACGATGGAGAGCTTGCTGCGGACACACTGGTGGAGTTCCTCTATGATGTCATTGAGGATCCAGTTGAGATCATTAGCAATGTGCGTGAGTTGAAAGGTTTCCATAATATTGAGGAGGATATCAAGCTGATAGGCTTCTTCAAGAGTGAGAAATCTGACCACTACCATGAATATGAGGACGCAGCAGAGGAGTTTCATCCACACATCAAGTTCTTTGCCACCTTTAGTCCAAAGGTTGCTACAAAACTAGGCTTGAAGTTGAATGAGGTGGACTTCTATGAGCCCTTCATGGATGAACCCGTCGTCATCCCTGGTAAACCCTACAGCGAGAAAGAACTTGTTGAATTCATTGAGGACAATGACAGGCCAACACTGAGGAAAATGCAGCCACACAACATGTATGAGATCTGGGCGGATGCTCTTGATGGTGAGCATATAATTGCTTTTGCTGAGGAGGGCGACCCAGACGGCTTTGAATTCCTTGAAATCGTGAAGGAAGTGGCAGAGGATAACACCGACAATCCCGACCTGAGCATCGTCTGGATCGACCCCGATGACTTCCCTCTGCTTGTCCCCTATTGGGAGAAGACCTTCGACATTGACCTGTCCTCACCTCAGATTGGTGTAGTGGAGGTTGATGATACCCAAACTGAGCTGTTGTATCTTCTGCAGGCTGAAAGTATCTGGTTTGATATGGATGATGATGACGACATGCCAACAGTTGATGAGCTGGAGGATTGGCTGGAGGATACCTTCAGATATTCACTTCCAAATGTTGACATCACTTATAAAACCAAAACAATTAGCAATATTGCTTTCAGTTCATTGCCATCCATTTCTTTCAATCGTAAGGACAATACTGTAATTGGCCGACAGGATGTGACCTTATGTGACATTAGCCGGAGAAGGGATTGTCCAGCCTTCCTTCTGTGTCTAAAAAGTGCAGTAAATCACAAACGTTTTCTACTGAAAAAGAAACATTGATATTTTATTTTTTTTTAACGAAGACAACTTGGTTTTACTCTTAAGTCTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15930478_15944692.mRNA True 1627 mRNA 0.46 14 15930478 15944744

Neighbor

gene id symbol gene type direction distance location
CI01000004_15906907_15909647 HNRNPC coding upstream 20809 15906907 ~ 15909669 (+)
CI01000004_15892502_15900203 DCAF8 coding upstream 29626 15890373 ~ 15900852 (+)
CI01000004_15867404_15875293 NA coding upstream 55174 15866985 ~ 15875304 (+)
CI01000004_15859240_15861471 APOL1 coding upstream 67029 15859240 ~ 15863449 (+)
CI01000004_15825817_15827475 TEP1 coding upstream 102875 15825817 ~ 15827603 (+)
CI01000004_15947153_15953245 NA coding downstream 2409 15947153 ~ 15953870 (+)
CI01000004_16008731_16013012 NA coding downstream 63871 16008615 ~ 16013049 (+)
CI01000004_16017111_16024481 SALL2 coding downstream 72241 16016985 ~ 16024782 (+)
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding downstream 92380 16037124 ~ 16044563 (+)
CI01000004_16090188_16090874 NA coding downstream 144682 16089426 ~ 16090928 (+)
G34216 NA non-coding upstream 1728 15928501 ~ 15928750 (+)
G34215 NA non-coding upstream 5982 15923704 ~ 15924496 (+)
G34214 NA non-coding upstream 9592 15920683 ~ 15920886 (+)
G34213 NA non-coding upstream 42944 15887278 ~ 15887534 (+)
G34205 NA non-coding upstream 87076 15843132 ~ 15843402 (+)
G34228 NA non-coding downstream 70162 16014906 ~ 16015106 (+)
G34229 NA non-coding downstream 74519 16019263 ~ 16019489 (+)
G33830 NA non-coding downstream 213968 16158712 ~ 16160998 (+)
G34266 NA non-coding downstream 235764 16180508 ~ 16180849 (+)
G34297 NA non-coding downstream 356489 16301233 ~ 16309306 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 838509 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1893578 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3274767 12646838 ~ 12652570 (+)
G31865 NA other upstream 3735331 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4262819 11666900 ~ 11667659 (+)
G33815 NA other downstream 118671 16063415 ~ 16066464 (+)
G34400 NA other downstream 1032584 16971995 ~ 17025976 (+)

Expression


Co-expression Network