CI01000004_16017111_16024481 (SALL2)


Basic Information

Item Value
gene id CI01000004_16017111_16024481
gene name SALL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16016985 ~ 16024782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16017111_16024481.mRNA
CTATATAAATGAAACATGGATTTTTGATTGTTTCTCAGAACTGATGCCGTGAGATTTGCTGTAATTTAGTTTAAAGAGAGAGATTTTCACTCATGGGCCATTTAGCCATTGACTTTCCCCTGCATCATGTCACGCCGGAAACAAAAACGACCTCAGCACTTTTTCAGCCCCATCCTCAACACTTCGTGGCTACTTCAACATGAGGAGCAGTTGGCAGTGAAGTCCCTCACCTCTACTCTTGCAAAGAACTCTTCCTGCTCTTCCACATACTCTACAACTCAAAGCTGTCAATCAACCTTAATCCCAAGTCCACCAATTGAGAGGCTCACAACACCTTCTCTGACCAGACCAAACCATCCTATCTTTCACATCCCCTGCCAGCCCATACAATTTCCCTTAAACCTAACAGAGTCTCAACTTTCCCATATCCCTGACATCCCATCCCATTCTACTAATCAGACTATCACTACCACTGCACCAACTGTGCTCTCTACCCACAACCACACTCACTCACCCATGGCTTCTCCAAAGTTAGGTGTGTCAGCAACCACAACCTCTTCTTCATCCTCCTCCACTGCTGCTTCTCTCTGTGTGCCTCCATATCCTGGAAGCCCCAGTTCTATGCCTCAGGGTCCCCCAAGTCCAGTTACACCCTCTTCCAGCCCAAGCACAGTCCCTTCAGCCCCAGCATGTGCACCCGTCAGTATTGCTTTCATCTTGGAGGAGCTACGTGTGCTGCAGCAGAGGCAAATCCATCAAATGCAGATGACTGAGGAAATCTGTCGGCAAGTATTGAGACTGGGAGGAGGATCTTGTGAAGTGGATTCAAAGCCTTTCATACTACCATCGCTGCCACAGCTCTGTTTAAAAAGTTCTGATAACAACCCCAGACCCTCACGACCAAAGTCATCACCTCCCCCTACCTCTGTGGCCCCTCTTTTGGCCTGTTTCTCATCCCTGCTACCCCCTCAGACCACCTCTAAGTCCTCTAAACATGCCCACCCTCTCTTGAATGTCTTGCGCCCCCATAAGGCACAATATGACAGTGGGGTAGTTTCTCCAGCAAACTTCACCAATCATACAAGTGCTGCCACATCCTCATCAGTATCCTCACCTGCTGCCTCAAACTATCCACTCACACTTTCCCTTGGCCTATCGTCGCAAAAATCCTCTAACACCACAGGAGCCAGTGGAAACAGTAGTCTTACCTTCCCAAACCAGTCTCTCCCAGCAGCTGCTGTCCCTTCTGCCCCCTCACAGGATACAAAACTCTCTGGTCAAGGAGGTACGCCTGTCTTATCATCTGGGCGCATGCAGCATGCATGCCGATTTTGCCGGAAACTCTTCAGCAGCGATTCATCCCTGCAAATACACTTGCGTTCACACACAGGGGAGCGTCCTTACCAGTGCCCTGTATGTTTCAGTCGATTCACCACACGAGGGAACCTCAAGGTCCACTTCTTGCGTCATCGTGAGCAAAACCCTGAACTCTCTTTTTCGTTGTTTCCCTGCTCACTTTTTGCGTCTGTAACTGGGGGATCAATGGGAGGATCAGCACAAAAACAAACGATCACCTCCACCAATACAAATGCTATTCAGAAGCATCAGAAACAACAAGAGGATGATCTGTGTGGTGACAGTCTTGAGGGCACTACTGCCTCAACACGTGCCACAACCTCATCTCTGCCTCCTAGTATTGATTTGGCTCTGCTGACCACTGCACACTCTCTCCTTCAACTCAACCGTGCTGCTGCGGCTGCGGCTGCTGCAGCCTCCACATCCACTACCTCCTCAATAACATCTTCATCATCATCCTCCTCTCTGGCCTCCACCCTTCTTTCATCTCCTGCCTCATCCACCTCCTCCATTGCTGGGGTATATAAAGGAGTGAAACAACAGTGCTTTGATGAGAACACCCCACCCATACCTACTCTGCTCCCCCATTCTGCTTACTCACAGCTTGCCAACTTACCCAAAATCTTCTTCCCAGCATCTTCCACTCACCATCTTCCAGGCCATGGGTTTCTCAGGCAGACAACTCCAGCCGGGTCATTCCTGCCATCCCCGCAACAACATATCCCGTTCCCATTCACAGCTTCATCCACTGCCCCTTCCATCTCCACCCCAACCTCGGACACATCAAAGCTGCAGAGACTGGTGGAAAAGTTAGAGAAAGAACCACATAGTCAATCACACTGGGTTTCATCCATTGGGGAGACTTCTACCAGCAGCCACAGTGTAGCAAGTGCATTAAGCTATAGCACCAGTGGTTTAATGAGCACAAGTACATTCAGTACAAATGTGGTCACCTCACTTCCATCATCTACAATCCAAATACCATCATCCCTCTTCAGCAAGGAGTCACCTTACCTGGGACTTATGAACTCTGCTGGGACACTTGCCCCAAATCAGTGTAGCGTGTGCCTGCGGGTGTTAAGCTGCCCAAGAGCATTGCGTCTGCACCAGGCTACTCATTTAGGTGAGCGACCCTTCCCCTGCAAGCTATGTGGTCGTTCCTTCTCAACAAAAGGAAGCCTTCGAGCACACCTTGCCACCCATCGAGCCCGCCCACCAAACAGTCGTGCCCAGAATTCCTGCCCCTTATGCCAACGGAAGTTTACCAATGCCCTTGTCCTGCAACATCATATCCGCATGCATTTAGGAGGACAGCTACCACCAGAGGACATGCCTGATACTTCAACAGAATGTGATACTTTGTCCCATTCCCAATCTATTGAGCTCTCTGCTTCAGAGATAAGCCCTAGCATGGATGTTCAGTTACTACATGATGATCTACAGTCAGTTTCAGATTCTAGATATACCGAATCCCTTGCTGTGAGCACTGCTCCCACAGTATGTCCTGTAACCTCCAGCCTACCTGCTTCATTTAGCTCAGGTCGTATACCACCTTTCAACCTAAGCCCTGACCCCTCCTTGAATCCAACTCCCCATTCACCTCCAACATTCAGACCTGATCCCCCTGAGCTCTCTCAGTGTGTATCTTCTCCAGTAGAATCTGCAGCATCACTTGTCCCTCCTGCCACCCAGTCAGCATCAGCAACAACTGGTCCTTCTGCAACTAATGAACTATCTTTTGAACTTTCCAGCAACACTGCCTCCTTGGAAGATAAAAAGATGTCTGCTCTAATGAAAGCCAGTCCACAAAGAGATGACTGTGAACTCAGTGAAAATATATCTCTCTCACCTATTTCTTGCTCTGGATCCAGATCAAATCTGGAGGATCTTCTTGGTATACAAGCTCAAAATGCATCCAGGATTCCTAGGCCACATTCAGCATCAACACCACCTTCTCTTCTTGCGCTGAGATCTGAGAGTGTGTCTTCTCATACGGTACGCCTAGAGGAGCCTGACCAAAGCCTTGTCCAAACATCCAAATCAATCCCCCAAGAGGAAGAAAAGACAGATGATAAAATACATAAAACACCAAAGAATGGTCAAAGGGCAACTCCAGATTTGAGTATTAATGCAGATATGGTGTCAGACACTGCAGACAAGACAAATGAGGATGCAGCTGAGACTGAGGAGCCTGACATACATGTGCAGAAGATCATAAAGGAAACTCACTCTAGTTCAACCGCAAAGGATAAAGTGGACCTTAAAGATACAACAGGAACTGAAATGGACAAAACAGACTCAACTGTATGCATATCAATGACTCCCAGTCTTCCACCTCCCATGCCAGAGAAAAAAATCTACCACTGTTCTGAATGTGGAAAAGAGTATGCAAGTCGCAGTGGACTCAAGCTGTACAGTACTAGACAATATACTGCTCTTAACACCAACTAGACTAAAGAGTCGGGTAAGATTGTTTAACATGCCTGTATGTTAGTCAGTGTAAGCTCTTGTTACTTTAATATTGTCAGTGTAGCTATTGAAAAAGGTAGAATTTGACTGATTCTGAGATGAACCACTATCTAGCTTAAAAAGATAACCCTTTCTATATTTCTTGGTGGAAATGTTTGTTTCTATGGTGATGTTTGTTCTTTGTCTGGATACTTTTACATGTATCTTCCATAGAAATGAATTGGGTGTATGAGTCTGACTGTGAGTTGTAATTTCATGGTACAGCTAAAAGATAAAAATGGAA

Function

symbol description
sall2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system; neural tube; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in coloboma. Orthologous to human SALL2 (spalt like transcription factor 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16017111_16024481.mRNA True 4108 mRNA 0.47 3 16016985 16024782

Neighbor

gene id symbol gene type direction distance location
CI01000004_16008731_16013012 NA coding upstream 3936 16008615 ~ 16013049 (+)
CI01000004_15947153_15953245 NA coding upstream 63115 15947153 ~ 15953870 (+)
CI01000004_15930478_15944692 NA coding upstream 72241 15930478 ~ 15944744 (+)
CI01000004_15906907_15909647 HNRNPC coding upstream 107316 15906907 ~ 15909669 (+)
CI01000004_15892502_15900203 DCAF8 coding upstream 116133 15890373 ~ 15900852 (+)
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding downstream 12342 16037124 ~ 16044563 (+)
CI01000004_16090188_16090874 NA coding downstream 64644 16089426 ~ 16090928 (+)
CI01000004_16117960_16125599 DHRS1 coding downstream 93102 16117884 ~ 16125874 (+)
CI01000004_16138496_16143438 NA coding downstream 113714 16138496 ~ 16144117 (+)
CI01000004_16217935_16218580 NA coding downstream 193071 16217853 ~ 16218580 (+)
G34228 NA non-coding upstream 1879 16014906 ~ 16015106 (+)
G34216 NA non-coding upstream 88235 15928501 ~ 15928750 (+)
G34215 NA non-coding upstream 92489 15923704 ~ 15924496 (+)
G34214 NA non-coding upstream 96099 15920683 ~ 15920886 (+)
G34213 NA non-coding upstream 129451 15887278 ~ 15887534 (+)
G33830 NA non-coding downstream 133930 16158712 ~ 16160998 (+)
G34266 NA non-coding downstream 155726 16180508 ~ 16180849 (+)
G34297 NA non-coding downstream 276451 16301233 ~ 16309306 (+)
G34322 NA non-coding downstream 424064 16448846 ~ 16449090 (+)
G34323 NA non-coding downstream 424898 16449680 ~ 16455626 (+)
G34220 NA other upstream 77035 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 925016 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1980085 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3361274 12646838 ~ 12652570 (+)
G31865 NA other upstream 3821838 12192130 ~ 12197418 (+)
G33815 NA other downstream 38633 16063415 ~ 16066464 (+)
G34400 NA other downstream 952546 16971995 ~ 17025976 (+)

Expression


Co-expression Network