CI01000004_16138496_16143438


Basic Information

Item Value
gene id CI01000004_16138496_16143438
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16138496 ~ 16144117 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16138496_16143438.mRNA
CCTCGGTCTGACCGGACAGGCGAAAAACACTTCGGGATTTCCAGAACAAAAGCGACAACGGACGATACAGACCAGCTGAAGTGGCGTATCCACATACAGCCTTGGGAGAAATTCAAGCGGTTAAACGAACTTCTATATGGTTCTACGGGGTTAGGCAAACGGGGGAAGTGGAGCATTACGTGCGCTGGAAAGGGGCAAGGGAGCTGTGAAGGGCAGGGCCCCCATCTCTCTTTTGCCCAAGTCTGCCAAAGTGGGGGTTGGGTGTGCATTGGTGTAGAGTATACGACGGGCTTTAATAAAAGGCTAATGTGTGGAAGAGAACGGCAGGGGGAAGGGGGTGACATCTGTCCTTCTTTCAACTTTAGAGAGGAAAGTCAATGGCTGGACGTCTGTGGCAATAGAGGTGTGACATCTCTGATGGCGACGCACACTGACCATGACTTGAAAGTTATCTCTCCGAGAGGGGTGGCAGCAAAAAGACAAGACGGAAACCTCAACAGTCCACGGCTGCAAAAATCAGCATACCACATTTCCGACGGAAACCTCACCAGTCCACGGCCACAAAAATCAACACACCACAATTTCGACGGAAAGGAACACGCAAGCCCCTCTAATCGTAGACCAAGAGAGAGCAATGGCAGCTCTGCAGTAAGCTTCAGCACTAATAATAACGCTGTAGTATGTCTTCCTTTGGTATCTGAAGGACTGAAGCTAGTGTGGACCCAGTCCGATCAAACACGTGAGCTGGATAGTGTCCCTCAACTTGTTCAGGCCTTCAACACCTTCCCCTATCCAACATCTCAAGAGGTCAGCACTCTTGCCCGTGTCTGTGCTCTTCCCTTAGATAAAGTCAAAGTGTGGTTCATGGTGCAACGCATCAAGTATGGAATCAGCTGGGCATCGGAGGACATTGAAGAGACACGGCTCAAGCTGGCTAGGCCAGGGCAAACAAGTGAGACTGAACACAAAGAGAGCACTATGAAGAGGAAAAACGAAATTGAGGATTTTATAAAAACTGAAGACCATGTAGAAGATCTAGCACAAAGTCCACAAGTGCCTCGCAAAAGACATAAAACTGAAAGCACAGAACCAGCAAAGCTCTCTCCTGCTCCCTCACGTTTCCGTTCATCTCTCCCTCCTCCTCAGGATTCGTACTACTACCGACAACCAGTAGAAATGCCAGAAACACCTCAAGCAGCTACCCCACCTACTTCTACAGAGTCTCCTGTTGGATCTGAGCAGCCACGGCATGGCCGCTACAAAAAGTCCAAAGCCCAGTTAACTGCACTGCGTAAGAGTTTTCTGCAGGAGAACTGGCCTGATGAGACAGAGCTCCAGCGCTTACAAGAGGAGACTGGCCTAACTCGTAATGAGATTCGAAAATGGTTTAGTGACAGCCGCTACCAGCTGCGAAATGGTAGGGGATTGACAATGTCATTACCCACTTCTCAAGGAGAAAAAAATGAACCCAACTGTAGTCTATCATCTCAGTCTCAGGAGGTTCAGCCTCTTCCTCTCACCACTAAAAAGCAAACTACACCGCATGCTGACAACGAAGGCAAAGAACAGACCAGGCAAAGAACGGGATCACGAAAGAATCGGTCGAAGGGCTCTCAATTTTTCCAGCTTTTCCTGTCTAACACTCTTGAGGCATTTGAAGACGGAGCATTAGGAGCAGACGAGGAGAAATGTTCAGAGGAAAGTGAGATACAGAATAATGATGAAGTTGGAAGCGAACAGGAAAGTGAGGGACATTGTGTGACGCCTCCGGAGCCAGCTGCACCCACTTCCTCCTCTTCTTCCCCATCCATCACCCCTTCTAAAAAACACTCAGCCAGGTCTTCAAAGTCTGCACGCTCTGTCAAAGCAAATGCTTTGAATAACTCCCTAAACTCCTTGGACATCTCTTCACCTACTTCAGTATTAACAGTGGCTGGACGACCAAGGAAAACAAAGGAACAACTGGCCATCCTAAAGGAATACTTCCAGAAATGCCCATGGCCAAAGAGCAATTTATACACACAGCTAGTGGAACTGACATCTTTGCCTCGTGCTGACATTATCCAGTGGTTTGGGGACACGCGTTATGCTGTAAAAAATGGCCATGTACGCTGGGTGCATGCTGACGTACGTGAACAAGTGCTTGCCGAGATAGCATTGTTACAAAGTGGAGCAGCTGCTGCCGATGCCAGTGGAACCCCAGGAAGTGAAGGCAACAGGAAACGTAAGTCACAAGGGAACTGCACAACAAAAACACAGAAGTCTGCCACGGATTCTGTAGACATCAGTCCGTTAGAGCTGTATTATCAACAGACGGGACCGTTGCAAGAGAAAGACCTTGACCATCTCTGCCGTAAGTCAAAAATGAGTTACCAACAGGTGCGAGACTGGTTTGCGTCTAAAGACAATACAACACTGGACCCAGAGCTCACTATTATTGATTAATATAAAGAAGAAAACTGTTTGTGCTCATGTCTGTTAATCTGCTGTGAGTCCTGTAATTTAGCAAGACCCCAGTATAAAATCACTTCATGCAATGCCCTCTTTTCCACTGTGTTAAAAAACAGCAATGTGAAATATTTTCTTCAACAGCCACTACACCATTTGTTACTTATCCGGCAGGCAGTATTGAAAATGCAAAACTGTAATGTATTTTTGGTCTTTACCGACTATTTGACTACATTCATTACCAAGTATTACCCTTGTTATGTTATGGTATGGGGGGAGGGGGGGGGATTCATCTGTACACTGGCTGTTCCTCCACTTCTTATGTTTGTGTTGTTGGTATTATTGTTAGTAATCTTTTAGAGCCTTAACTGCTGCTTCTTAGAACTGATATGATGCTCAAACTGTTTATTTTTCCAGGAACTTTGGTTTGGTTATCTATTAGGTACTGTAGTTTAGATGTTTGGGCCAGAAATGTTAGCAATGTGAGAGTATGTTTTTGTAAAAGTTTTTGTTTAATTCATTGAAGATCCATATGGCACTGTATATTGATTCCCTCTCAAACGATATAAACCTTAAGTTTACAATATATATTTTTTTTTTTCCCCTTCTAATGAGCTAACATTCCGCACTTAGAGGTTTATGGATCCATCTCTCTAATCATGCTACTTCATTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16138496_16143438.mRNA True 3124 mRNA 0.46 3 16138496 16144117

Neighbor

gene id symbol gene type direction distance location
CI01000004_16117960_16125599 DHRS1 coding upstream 12622 16117884 ~ 16125874 (+)
CI01000004_16090188_16090874 NA coding upstream 47568 16089426 ~ 16090928 (+)
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding upstream 93933 16037124 ~ 16044563 (+)
CI01000004_16017111_16024481 SALL2 coding upstream 113714 16016985 ~ 16024782 (+)
CI01000004_16008731_16013012 NA coding upstream 125447 16008615 ~ 16013049 (+)
CI01000004_16217935_16218580 NA coding downstream 73736 16217853 ~ 16218580 (+)
CI01000004_16221780_16232426 PSMB5 coding downstream 77663 16221780 ~ 16232940 (+)
CI01000004_16346680_16401924 NA coding downstream 202563 16346680 ~ 16401924 (+)
CI01000004_16407140_16438873 NA coding downstream 262868 16406985 ~ 16439250 (+)
CI01000004_16467711_16471121 NA coding downstream 323594 16467711 ~ 16471507 (+)
G34229 NA non-coding upstream 119007 16019263 ~ 16019489 (+)
G34228 NA non-coding upstream 123390 16014906 ~ 16015106 (+)
G34216 NA non-coding upstream 209746 15928501 ~ 15928750 (+)
G34215 NA non-coding upstream 214000 15923704 ~ 15924496 (+)
G34214 NA non-coding upstream 217610 15920683 ~ 15920886 (+)
G33830 NA non-coding downstream 14595 16158712 ~ 16160998 (+)
G34266 NA non-coding downstream 36391 16180508 ~ 16180849 (+)
G34297 NA non-coding downstream 157116 16301233 ~ 16309306 (+)
G34322 NA non-coding downstream 304729 16448846 ~ 16449090 (+)
G34323 NA non-coding downstream 305563 16449680 ~ 16455626 (+)
G33815 NA other upstream 72032 16063415 ~ 16066464 (+)
G34220 NA other upstream 198546 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1046527 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2101596 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3482785 12646838 ~ 12652570 (+)
G34400 NA other downstream 833211 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015750 homeza coding NC_007113.7 CM002886.2 38271392 ~ 38275658 (+)