CI01000004_16217935_16218580


Basic Information

Item Value
gene id CI01000004_16217935_16218580
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16217853 ~ 16218580 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16217935_16218580.mRNA
GTATATAAATCACTGGTCTCAGAAGGGTCTTTTTTTTGTTCGTGCAGCTTCCAAGGCTCAGTTTATCTCACTAAAAGGAAAAATGGCACTTCAGGATGTTTGTGATTTCCTGGAGATCCTTGATGACAGCAGCCCGTGCACTTCTCTGCCGAATGAGATGGGACACGTGTGGAGGACACCGTTTGAGTTTGACAGAGATAGTCCTTTTCACTTTCTTTTCCCCCCTCAGCAGAACAGCAGAAAACACAAGACACCAACTGTTCTCTCTTCAACTTTATCCTGTCTGTCACCTCACCAGCAACCCTTTCAGCTGTCACACGGTACCACCACTTTGGGGTTTATATTTCAGGATGGCGTGATAGCCGCTGCGGACACTCGTGCCAGCTGTAAGGGTCTGATTTGCTGCCCGATAAGTCAGAAGATAATGCCCATCCACTCTCACCTGGTGGTCAACACCTCGGGAAGCGGTGCCGATTGTATGCTATGGGAACGGATTCTCACCCGAGAGATGAGGCTTTACCAGCTTCGCCATCGCAGGAGACTAAGCGTCAATGGAGCTGCAAAGCTGCTCTCCATGATGCTTCATCCATTCAAAGGCACTAATGTGTGCGTGGCGGCTACTCTATGTGGATGGGATGGAGAAGAAACTCAGGAAACCCTACAGTCTAGCGTGGAAATGGCAGATGTTACCACTGTATCTGCAATTTCAGATGAATCTGCTCTAGGTA

Function

NR:

description
proteasome subunit beta 5ta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16217935_16218580.mRNA True 728 mRNA 0.49 1 16217853 16218580

Neighbor

gene id symbol gene type direction distance location
CI01000004_16138496_16143438 NA coding upstream 73736 16138496 ~ 16144117 (+)
CI01000004_16117960_16125599 DHRS1 coding upstream 91979 16117884 ~ 16125874 (+)
CI01000004_16090188_16090874 NA coding upstream 126925 16089426 ~ 16090928 (+)
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding upstream 173290 16037124 ~ 16044563 (+)
CI01000004_16017111_16024481 SALL2 coding upstream 193071 16016985 ~ 16024782 (+)
CI01000004_16221780_16232426 PSMB5 coding downstream 3200 16221780 ~ 16232940 (+)
CI01000004_16346680_16401924 NA coding downstream 128100 16346680 ~ 16401924 (+)
CI01000004_16407140_16438873 NA coding downstream 188405 16406985 ~ 16439250 (+)
CI01000004_16467711_16471121 NA coding downstream 249131 16467711 ~ 16471507 (+)
CI01000004_16490931_16555397 CARMIL3, LRRC16B coding downstream 272351 16490931 ~ 16555993 (+)
G34266 NA non-coding upstream 37004 16180508 ~ 16180849 (+)
G33830 NA non-coding upstream 56855 16158712 ~ 16160998 (+)
G34229 NA non-coding upstream 198364 16019263 ~ 16019489 (+)
G34228 NA non-coding upstream 202747 16014906 ~ 16015106 (+)
G34216 NA non-coding upstream 289103 15928501 ~ 15928750 (+)
G34297 NA non-coding downstream 82653 16301233 ~ 16309306 (+)
G34322 NA non-coding downstream 230266 16448846 ~ 16449090 (+)
G34323 NA non-coding downstream 231100 16449680 ~ 16455626 (+)
G34330 NA non-coding downstream 253427 16472007 ~ 16472233 (+)
G34277 NA non-coding downstream 422762 16641342 ~ 16646222 (+)
G33815 NA other upstream 151389 16063415 ~ 16066464 (+)
G34220 NA other upstream 277903 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1125884 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2180953 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3562142 12646838 ~ 12652570 (+)
G34400 NA other downstream 758748 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015753 NA non-coding NC_007113.7 CM002886.2 38370535 ~ 38371944 (+)