G27020


Basic Information

Item Value
gene id G27020
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4063397 ~ 4072269 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30497
GTAAAATTCAGATGAAGAAGCCAGCTCAACTTGCTCGCACGAGGTTGTCGTTTCATCCCGTCTCTGAACCAGTCAATGCTTTTGATTTTATCTTACAAGAAGTTACCAAATAGCAACTTCCAGTTTTGTAATTACTTCTGAAAACCATCATGACCAGAGTGAACTAGCTGAGATGGAGTAAACATTGACAAGCATTATACGACTGACAGACCGCAACGGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGAAGAAACAAAGTCACCTACATCTTGGATGCCCTGGGGGCGGACCGTTAAAGAACGTGACGCACACGTCTCCCGGACATCCCGTAGAATTCAACCAACCAGATGACGACTTCGAAAATCCTGAAGTGTTTCCAGTTAAGTGTGCCATATGCATCAGACATTCAGCCAACGGCCCGTGGGCGTGACGTCTGAGTCTGAGACTAAGCTAAGGACCATGCCAATGTGTGGATCTTGTATTAGAGCAGTTAAAATTTGGTGCTTTGAGTACAATTCTCTCATACTGATCACTGGATGTTCAACATGGCACCTCATGGCAAAGAACTCTCTGAGGATTTGAGAATTAGAATTGTTGCTCTCTAAAAGATGGCCTAGGCTATAAGAAGATCGATAACACCATGAAACTGAGTTACAGCACAGTGGCCAGGGTCATAGAGAGAGGTTTTCCAAGACGGGTTCCACTCGGAACAGGCCAAAGAAGTTGAGATGCTGTGCGTCAGGTGCAGAAGCTGGCTTCAAAAAACAGATGCATGAGTGCTGCCAGCATTGCTTTAGAGGTTGCAGAAGCGGAAGGTCAGCTTGTCAGTGCTCAGACCATACGCCGCACACTGCAACAAGTCGGTTTGGATGGCCGTCGTCCCAGAAGGAAGCCCGCAAACAATTTGCTGAAGACAACCTGTCCAACAGCATGAATTACTGGAACCATGTCCTGTGGTCTGATGAGACTAAGATAAACTTGTTTGGCTCAGATGGTGTCCAGCATGTGTGGCGACGCCCTGAAACTGGGCTGAACGGCATGATAATGACCCCAAACACACCGCCAAGATGACAACTGCCTTGCTGAGGAAGCTGATGGTGAAGGTGATGGAGTGGCCAAGTATGTCTCCAGACCTGAACCCTATTGAGCACCTGTGGGGCGTCCTCAAGCGGAAGGTGGAGAAGCGTGTCTACTCCATGTGTCTACCATGTGTCTACTCATTTTTAGCGATTTCTCTTCCGGTTTGAAAAGCAAAGTTGGAGCAATGTGACGGCTTACCGGCAAGATCCGGAGTGGTGATTGGCTGCCGGGGATCCAGTAGGGGCTGGATGAATGAGCTGATGTCAACCATTTCTGAGCACTTCTCTGCATTTATTCATGATAAAGAGCTCATTAATTCTCATTATTCATGAGAATGAACTCTTAATCCAAGAGATGACATTACAGCAGAGTTCAAATGACACATGCTTGCCTGTTCAACTGCAGCGTTGTCCTTTAGGCATATACAAGTGTATGTTTCCTCAGTAACACAAAAGTTGCGTTTTCCTCACGATGCATTTACAGCTGCTGTTTAACTACAAATACATAGAAAATATCACTGTAACAATACTTAATATGTAAGAACACGGAGCACGCATGAGAGCGGTTTCTGCACGGACCGCAAAAGAAACAATGACTTGACTTACCTTGGACTTGGCTGTAAACAGGAACATGGCACTCACCAACTCTGACTACTAGACCAGAGACTGAGGTCAATATATACACAGAGATTAAACAAGCACTGACATGAACACTTGAGCACAAGGGAATCTCATGACAAAAAGGAGCACATGGCAACATAAAATAACTGTGAAAACCACAAAATAAGACATGAAACATGAATATGAAACAAAACCAAAACTAGACATGGCAGACTGTAGTTCTCGTATACGTGATGAAAATATTAGACATTTTAAATGTTCTTCCATCTTTGTACCTTGTTTCTTGTCATAAGATTATATTTTTTAAAACACATCAAGGTGCCCTCAACTCTGTTTTTTCCCCCACTCATATGGTAATGTCCATTATTCTGTATAATGAGTGTGTTATAGTTCTGTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30497 True 2104 lncRNA 0.37 8 4063397 4072269

Neighbor

gene id symbol gene type direction distance location
CI01000004_04048829_04053849 NA coding upstream 8827 4045928 ~ 4054570 (+)
CI01000004_03934726_03935639 NA coding upstream 127527 3933685 ~ 3935870 (+)
CI01000004_03878083_03909016 NA coding upstream 154088 3878019 ~ 3909309 (+)
CI01000004_03814120_03839793 NA coding upstream 223590 3814051 ~ 3839807 (+)
CI01000004_03735876_03736152 NA coding upstream 326380 3735754 ~ 3737017 (+)
CI01000004_04123289_04123846 NA coding downstream 50355 4122624 ~ 4123963 (+)
CI01000004_04172679_04173047 PBX1 coding downstream 99385 4171654 ~ 4174352 (+)
CI01000004_04231304_04239652 NA coding downstream 158942 4231211 ~ 4240123 (+)
CI01000004_04315741_04317415 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding downstream 242507 4314776 ~ 4317616 (+)
CI01000004_04400735_04404462 ELOVL1A coding downstream 328153 4400422 ~ 4404786 (+)
G27018 NA non-coding upstream 3163 4059917 ~ 4060234 (+)
G27013 NA non-coding upstream 20323 4042830 ~ 4043074 (+)
G27010 NA non-coding upstream 24847 4038283 ~ 4038550 (+)
G27009 NA non-coding upstream 25249 4037923 ~ 4038148 (+)
G27008 NA non-coding upstream 26875 4036247 ~ 4036522 (+)
G27022 NA non-coding downstream 4833 4077102 ~ 4077398 (+)
G27023 NA non-coding downstream 5297 4077566 ~ 4077785 (+)
G27024 NA non-coding downstream 6002 4078271 ~ 4078586 (+)
G27025 NA non-coding downstream 8702 4080971 ~ 4082315 (+)
G27027 NA non-coding downstream 26058 4098327 ~ 4098718 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 510951 3550329 ~ 3553423 (+)
G26245 NA other upstream 541004 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 1304459 2745885 ~ 2769135 (+)
G25992 NA other upstream 1326629 2736536 ~ 2736768 (+)
G25882 NA other upstream 1490348 2548075 ~ 2573049 (+)
G27805 NA other downstream 1300556 5372825 ~ 5373803 (+)
G28165 NA other downstream 1660320 5732589 ~ 5733001 (+)
G28302 NA other downstream 2397759 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 2498951 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 3582503 7654234 ~ 7656383 (+)

Expression


Co-expression Network