G27025


Basic Information

Item Value
gene id G27025
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4080971 ~ 4082315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30502
GGTTCTTGTACAACCTAGACATTTTTTGAATTTTTGTTTATTCACAAAATATCTCAAGAACTCATTGAAAGCCTGTTTCTCTTGCTGTTTTAAAGGGCAATTCTTTCAGAAGACGTATTACTCATAAAACTCAAAAAATAGCTTGAGTGAGCATTTAAAGTTAACTTTCATAAAATATATTACTTTCTGAGACCCAAGGCCTTTGTTTTTTTTTGTTTTTTTCCTTCGCTCCCTTCATCACACGTAAGAGGAATAAACCGCTCTTGTACCTTTCAACAATATCTACGGGTTACGCCTCAGTAGTGAAAAAGTGTACCTGATTCTTCATCTGCTTTTCTCTGACTAGTAACGTACAGTGTATATCTGGGCAGAAATTATTCTTTCAAAGTGACAGATTTATCTCTTTCTGTTACAGCTTGTCAGAAATGCCAGGCTTCAATTTTCCAAGGCCTGGTTGTTATTGTGCATCCCAGTTTCCTCTTTCTTTCCTATCTGGCTGATCAAAACAAATGAAAAATCACATCTTTCACAAAGTTGCGAGAGCAGCATGATTCAAGTGGCTGCAATTTTTTGTATGACATTAAAATCTGTTGTTTGCAACGTTCAACACTCGCACATTCCAAACATATCCAGTGATGAGAAGCGACGCCATTTCTTTGGAAGCAGAAGCATGCTGAGATAATGATCTTACTTCTGCAGCTGCTTAATAACTGCATCTCATAATCTGTTGCTGTGGAGCATTTTCTAAGAACATTTTGTATGGTCATAATTAATTCACATATTTTGAATGTGCAAATTGATTAAGGGCACGACAGTTGTAAAAATCAATCAATCAATCAATCAATCAATGAACCACTGTAGACTGAAAAGATTTGTGGGCTAGACTGAAATCAAGAGGAGACTGAGCCTTTGCTGTTGCTGCACCAAAACTCTGGAATGGTCTACCTGTTTTTATTAGAACTGCCTCTACACTACATGAGTTTAAAACAAAACTCAAAACCCATCTTTTTTCTCTGGCTTTTAATTGTCATTGATGTGTCTGTGTCTGGTTTGTTTTGTGCTGTAATTTATGTTGTACATGGTGTTAGTTTGTTATACTGTACAGCACCCTGGTCAACAATTGTTGTTTTTATTGGTGCTATATAAATAAAGCTGAGTTGAGTTGAGTTGAGTAGTCACATGAACTGTTTTAAATATGTCTTTAGTAGCTTTCTGGGCATCTCAATGTGTTAATTATTTTGCTGGCAATGGAGGCCTCACTGAGCCATCGGATTTTATCAAAAATATCTTAATTCGTGTTCTGAAGAAGAATGAAGGACTTACGGGTGTGGAACTATATGAGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30502 True 1345 lncRNA 0.46 1 4080971 4082315

Neighbor

gene id symbol gene type direction distance location
CI01000004_04048829_04053849 NA coding upstream 26401 4045928 ~ 4054570 (+)
CI01000004_03934726_03935639 NA coding upstream 145101 3933685 ~ 3935870 (+)
CI01000004_03878083_03909016 NA coding upstream 171662 3878019 ~ 3909309 (+)
CI01000004_03814120_03839793 NA coding upstream 241164 3814051 ~ 3839807 (+)
CI01000004_03735876_03736152 NA coding upstream 343954 3735754 ~ 3737017 (+)
CI01000004_04123289_04123846 NA coding downstream 40309 4122624 ~ 4123963 (+)
CI01000004_04172679_04173047 PBX1 coding downstream 89339 4171654 ~ 4174352 (+)
CI01000004_04231304_04239652 NA coding downstream 148896 4231211 ~ 4240123 (+)
CI01000004_04315741_04317415 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding downstream 232461 4314776 ~ 4317616 (+)
CI01000004_04400735_04404462 ELOVL1A coding downstream 318107 4400422 ~ 4404786 (+)
G27024 NA non-coding upstream 2385 4078271 ~ 4078586 (+)
G27023 NA non-coding upstream 3186 4077566 ~ 4077785 (+)
G27022 NA non-coding upstream 3573 4077102 ~ 4077398 (+)
G27020 NA non-coding upstream 8702 4063397 ~ 4072269 (+)
G27018 NA non-coding upstream 20737 4059917 ~ 4060234 (+)
G27027 NA non-coding downstream 16012 4098327 ~ 4098718 (+)
G27044 NA non-coding downstream 85731 4168046 ~ 4168249 (+)
G27133 NA non-coding downstream 238844 4321159 ~ 4321368 (+)
G27138 NA non-coding downstream 252730 4335045 ~ 4335330 (+)
G27146 NA non-coding downstream 273002 4355317 ~ 4355544 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 528525 3550329 ~ 3553423 (+)
G26245 NA other upstream 558578 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 1322033 2745885 ~ 2769135 (+)
G25992 NA other upstream 1344203 2736536 ~ 2736768 (+)
G25882 NA other upstream 1507922 2548075 ~ 2573049 (+)
G27805 NA other downstream 1290510 5372825 ~ 5373803 (+)
G28165 NA other downstream 1650274 5732589 ~ 5733001 (+)
G28302 NA other downstream 2387713 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 2488905 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 3572457 7654234 ~ 7656383 (+)

Expression


Co-expression Network