G28730


Basic Information

Item Value
gene id G28730
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7661907 ~ 7663273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32483
GCAATCTTCACGCCAAAATAATCACACACATCATCTGTCAGGAACAGGACAACCAAATGATCAGCATTTGAATAAGCCATTTTTACAATACACAATTTGAATGAAAATCTGTCACATTTGCATATTATTCGAATAAAATAGATCTACCTATTTTGTTACCCCCGGGAAAAAAGGCCCTGTTGATTTTATTTTTCCCCAAAACATGGTAAAGGCCGACTGTGACACAGTTAGATTATCACTGGGGTAAAATACAAAATGCCTGAACTGCAATACAGTGAAATATGCCCAAACTAACATCATATCTTCACAATGAATCACATGCTCCTTCTTAGTGATCTAATTGCACATAACAAGACATGTAGTGACTGGTAGTTTGTATTCAGAATTCATACTATAGCACTTCGTATTTGCTTAGAGCAAGCACTGAAGAAAGTAGGCAGATACGTATGAGTTTGTTTGCTAAAGGAAGAGCCTTGGCCTGGAGGAATCTCTTTACACAAACACTGAAAAGCATTAGTCCTCTCAGAACAACTAAAAGTTAGTCGCCTCTTGTGCATGTTGGTAAAAATATAGGAGTTCTCACCTAGAGGTTGCCTCTCACAGACTGCCTGAACCCAGGACGTCATCAACTGGTTCAGGATTCTCTGCTCATGAAGGGGAAACATTTGAAGAATCACTCCTCTGGCTATAAGCTCTGGTATGATTGGTTGACCCTCCAGGAAGTGAATATTATGAAGGGCATCGCCCTGTTTGGCCCGCAGATTATCCAACCAATATTTGATAATACTCTGACGCTCCTGTGATGTGAAGAAACATAGCTCACTCTCGATGTTTTCATAGATGTCATCCTCCTCACATGAAAACCTGCGAGTGCCGCCTCCATAGCGTGGCTTCACTGCCTTTTGCATCCCCATCTGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU32483 True 919 lncRNA 0.41 3 7661907 7663273

Neighbor

gene id symbol gene type direction distance location
CI01000004_07654234_07655677 MRPL34 coding upstream 6126 7654234 ~ 7656383 (+)
CI01000004_07642418_07645369 FITM1 coding upstream 15948 7642361 ~ 7647147 (+)
CI01000004_07585030_07601316 NA coding upstream 59194 7584727 ~ 7602713 (+)
CI01000004_07568950_07581744 NA coding upstream 79235 7568950 ~ 7582672 (+)
CI01000004_07515025_07559926 KCNH2A, KCNH6, KCNH2 coding upstream 101506 7515025 ~ 7560401 (+)
CI01000004_07686845_07692184 NR2F6, NR2F6A, NR2F6B coding downstream 22745 7686018 ~ 7693082 (+)
CI01000004_07712175_07712384 NA coding downstream 48902 7712175 ~ 7712402 (+)
CI01000004_07759670_07760529 RPS28P9, RPS28 coding downstream 96345 7759509 ~ 7761023 (+)
CI01000004_07775338_07780352 ANGPTL4 coding downstream 111969 7775242 ~ 7781318 (+)
CI01000004_07823292_07824588 NA coding downstream 159563 7822836 ~ 7826203 (+)
G28710 NA non-coding upstream 28329 7620115 ~ 7633578 (+)
G28714 NA non-coding upstream 165043 7491896 ~ 7496864 (+)
G28686 NA non-coding upstream 224171 7437236 ~ 7437736 (+)
G28682 NA non-coding upstream 233145 7427242 ~ 7428762 (+)
G28731 NA non-coding downstream 1452 7664725 ~ 7664993 (+)
G28732 NA non-coding downstream 2799 7666072 ~ 7666828 (+)
G28735 NA non-coding downstream 11124 7674397 ~ 7674628 (+)
G28736 NA non-coding downstream 11567 7674840 ~ 7675478 (+)
G28737 NA non-coding downstream 13019 7676292 ~ 7676497 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1087486 6570771 ~ 6572667 (+)
G28302 NA other upstream 1159820 6470028 ~ 6502087 (+)
G28165 NA other upstream 1928906 5732589 ~ 5733001 (+)
G27805 NA other upstream 2288104 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 770432 8414316 ~ 8439933 (+)
G28859 NA other downstream 935962 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1313165 8976254 ~ 8980984 (+)
G30797 NA other downstream 2834103 10497376 ~ 10497788 (+)
G31710 NA other downstream 3973978 11637251 ~ 11642400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016375 ano8a coding NC_007113.7 CM002886.2 24321751 ~ 24348948 (-)