G28682


Basic Information

Item Value
gene id G28682
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7427242 ~ 7428762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32426
CATTGCCGGAGAACATAGCCATCCAGCTGCCGAAGAGCACTTCTCCCTAGAGAGGATGCGCAAGAAGCTTACTTAAGCAAACTATATGTAATGAGAACACATTGTTAAAAAAAACTCTTCATTGCAATCTATCGTGCAAATATGCTCCTACGTACTTTGAGGTTCACCACTGGCAAGTTGAAGCGGTCCCCTTTCTTGACGATGGTAGATAGGTCTTGTAGGTGAGAGGAGAGGAAAGCTCTGTAAGTTGATGTCAGGCCCCTGGTACGGGCTTGCTGGTAACACTGATAATCTGCCCCTCGGATTCCACGCATGTCCCCTGAGAATGGGGTATTGAGTGCCACCAGGTGCAACGCAGGCATCGAGTGTGCAGTGTGTGGAAGAACATTGAAGCCTGGCAGTACGCTCTTTAACTCCTGGCTGTGAACTCTGGGTACACTGTGGTCGCTGGGTCTGCTCAGGCCTTGTGACAAATCAGATGAGGAACTCTCTTGGGGAACTGGGATGAGCTCTCCTAGCTCAACTTTCTTCCAGCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32426 True 539 lncRNA 0.32 4 7427242 7428762

Neighbor

gene id symbol gene type direction distance location
CI01000004_07375432_07378296 NA coding upstream 48555 7375432 ~ 7378687 (+)
CI01000004_07366683_07372144 GORASP1, GORASP1A coding upstream 54804 7366683 ~ 7372438 (+)
CI01000004_07360794_07364249 CSRNP1A coding upstream 62643 7359772 ~ 7364599 (+)
CI01000004_07322380_07326368 NA coding upstream 100694 7322266 ~ 7326548 (+)
CI01000004_07319769_07320274 NA coding upstream 106531 7319156 ~ 7320711 (+)
CI01000004_07515025_07559926 KCNH2A, KCNH6, KCNH2 coding downstream 86263 7515025 ~ 7560401 (+)
CI01000004_07568950_07581744 NA coding downstream 140188 7568950 ~ 7582672 (+)
CI01000004_07585030_07601316 NA coding downstream 155965 7584727 ~ 7602713 (+)
CI01000004_07642418_07645369 FITM1 coding downstream 213599 7642361 ~ 7647147 (+)
CI01000004_07654234_07655677 MRPL34 coding downstream 225472 7654234 ~ 7656383 (+)
G28379 NA non-coding upstream 39401 7387581 ~ 7387841 (+)
G28372 NA non-coding upstream 39843 7385044 ~ 7387399 (+)
G28423 NA non-coding upstream 44917 7380756 ~ 7382325 (+)
G28432 NA non-coding upstream 46646 7380066 ~ 7380596 (+)
G28657 NA non-coding upstream 75012 7352005 ~ 7352230 (+)
G28686 NA non-coding downstream 8474 7437236 ~ 7437736 (+)
G28714 NA non-coding downstream 63134 7491896 ~ 7496864 (+)
G28710 NA non-coding downstream 191353 7620115 ~ 7633578 (+)
G28730 NA non-coding downstream 233145 7661907 ~ 7663273 (+)
CI01000004_06571261_06572539 SEP15 other upstream 852821 6570771 ~ 6572667 (+)
G28302 NA other upstream 925155 6470028 ~ 6502087 (+)
G28165 NA other upstream 1694241 5732589 ~ 5733001 (+)
G27805 NA other upstream 2053439 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3874796 3550329 ~ 3553423 (+)
CI01000004_08414451_08436256 NA other downstream 1004943 8414316 ~ 8439933 (+)
G28859 NA other downstream 1170473 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1547676 8976254 ~ 8980984 (+)
G30797 NA other downstream 3068614 10497376 ~ 10497788 (+)

Expression


Co-expression Network