Gene
RNA
| Item | Value |
|---|---|
| gene id | G28372 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 7385044 ~ 7387399 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU32099 | True | 2356 | lncRNA | 0.38 | 1 | 7385044 | 7387399 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_07375432_07378296 | NA | coding | upstream | 6357 | 7375432 ~ 7378687 (+) |
| CI01000004_07366683_07372144 | GORASP1, GORASP1A | coding | upstream | 12606 | 7366683 ~ 7372438 (+) |
| CI01000004_07360794_07364249 | CSRNP1A | coding | upstream | 20445 | 7359772 ~ 7364599 (+) |
| CI01000004_07322380_07326368 | NA | coding | upstream | 58496 | 7322266 ~ 7326548 (+) |
| CI01000004_07319769_07320274 | NA | coding | upstream | 64333 | 7319156 ~ 7320711 (+) |
| CI01000004_07515025_07559926 | KCNH2A, KCNH6, KCNH2 | coding | downstream | 127626 | 7515025 ~ 7560401 (+) |
| CI01000004_07568950_07581744 | NA | coding | downstream | 181551 | 7568950 ~ 7582672 (+) |
| CI01000004_07585030_07601316 | NA | coding | downstream | 197328 | 7584727 ~ 7602713 (+) |
| CI01000004_07642418_07645369 | FITM1 | coding | downstream | 254962 | 7642361 ~ 7647147 (+) |
| CI01000004_07654234_07655677 | MRPL34 | coding | downstream | 266835 | 7654234 ~ 7656383 (+) |
| G28423 | NA | non-coding | upstream | 2719 | 7380756 ~ 7382325 (+) |
| G28432 | NA | non-coding | upstream | 4448 | 7380066 ~ 7380596 (+) |
| G28657 | NA | non-coding | upstream | 32814 | 7352005 ~ 7352230 (+) |
| G28651 | NA | non-coding | upstream | 83056 | 7301725 ~ 7301988 (+) |
| G28647 | NA | non-coding | upstream | 87703 | 7297092 ~ 7297341 (+) |
| G28379 | NA | non-coding | downstream | 182 | 7387581 ~ 7387841 (+) |
| G28682 | NA | non-coding | downstream | 39843 | 7427242 ~ 7428762 (+) |
| G28686 | NA | non-coding | downstream | 49837 | 7437236 ~ 7437736 (+) |
| G28714 | NA | non-coding | downstream | 104497 | 7491896 ~ 7496864 (+) |
| G28710 | NA | non-coding | downstream | 232716 | 7620115 ~ 7633578 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | upstream | 810623 | 6570771 ~ 6572667 (+) |
| G28302 | NA | other | upstream | 882957 | 6470028 ~ 6502087 (+) |
| G28165 | NA | other | upstream | 1652043 | 5732589 ~ 5733001 (+) |
| G27805 | NA | other | upstream | 2011241 | 5372825 ~ 5373803 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 3832598 | 3550329 ~ 3553423 (+) |
| CI01000004_08414451_08436256 | NA | other | downstream | 1046306 | 8414316 ~ 8439933 (+) |
| G28859 | NA | other | downstream | 1211836 | 8599235 ~ 8599603 (+) |
| CI01000004_08976512_08980033 | TTPA | other | downstream | 1589039 | 8976254 ~ 8980984 (+) |
| G30797 | NA | other | downstream | 3109977 | 10497376 ~ 10497788 (+) |
