CI01000004_07585030_07601316


Basic Information

Item Value
gene id CI01000004_07585030_07601316
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7584727 ~ 7602713 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07585030_07601316.mRNA
ATTTATAAACACGCTGGATGCTAAAAGCAAGGGTTTTCAGTGCAGAGCGGCCAATAAGGACATGGCTCATACAATCACGTGATCGAAGACTTGGAAGGAATGTGCGGACAGAATTAGGGTGAGAGAGAGAACGAGAGAGAGGAGGGGGATTTGGGAGAGAGACGCAGAGTCATCTCAGCCTCAGCGTTGAGGGAGGTTTAGAGACCGGCGCTATAGACTAACTCATCTCAGTCAATGCCGTTTACTGACGGATAGACACCTTGACACGGCACAAATATATCTAGAGAGGCAAGGATCGTAAGGATGTCATCCCAGCGTTCAGAGTGCAGAGATCTGTGCTCAGTGCCACCCTCCATGCCAAGCTTGGCATCGTCAACAGCTGCCCAGGGCTGGAACTGGCAGCAGGGGCAGCCAGGCAGTCTGCAATCCTCCAGACTGTTAGAGGACGACAAGCAGGACCTTTCCACCAAAACGACAGCACTCAGCCAGGAGGTGGACCAACGGGCAACCAGTCACCCATGCAGCAGGGGCGGGAAGAATTTGGGCAGTACAGCAGAAAGCCCCACAAGCCTCTCATCCTCTCCGTCACCCGTGTCTCCAGGGAAAGCCCTTTCCACCAACGGGGTGACATCAAGACCTTCACCGCCGAGTGCCATCTTGACATCTTCAGACAGCGATTGGGATCCGCCCCGCAGCATCTCAAAAACAGGCCCCACACCGAATTATTGCGTGATCGGCGTGGTAAATGACAACTACGTGGAGGGCATGGTTGAGGGCAAAATGGAGACACGCCCACCCATATCACCCCCTATGCAACAGAACCGAGTGGTCCAGCGCACAATGTCAGATAGTACCCACCTGACAGTGCCTGCTAGCCTCCCGCTGCCCGATAAATATCCAGGCAAGGATGTGCCGCCACCCCAGACCGCCGTAAAATATTTCACCACAGAGGACAAACACAGCGTTTCGCCATCCACGAGTATCCCATTAGACCCTACTACAAAGAAAGAACAGCCTGCTGGTGTGCCACAGAGTTCTGGCAGGATACAGTCACCGCAAAAGCTGTCGGAAAGTGGGAATGCTGTTTCATCCCGTGACATTCAGCCCAAAGGTGTTTGTGATGGTAGGGATATACAATATATCACCAGAGTAACATTTGGATGTCCTTTTGTCATAGTTTTCTTTTGCTGTACTGAGATAAGCCCACGTTTGACACGTATACACGTATACCACTCATTTATCTGTCTGAAACTGTGCAAAGGGATTCAGAGGAACCAAGGTTTTCATCTAGGCATCCCTGAAGTAAAAGAAGATAAGACAGGCAAGGAGAAAATGGAGAATGTGCCATCTGCTCTGAAGATGGAAAACACTGACATAAGTGAGAAGCAAGACAAGCCTGAGAAAATGGAGAAGACTGATCACCTGGACAAGAAAGATGAGATTACAAAGAAAACAGACAGCACGGATAAGACTCAGAAGAACAAGACAGCCAAAGCTGAGAAGAATGTGACGGCTGCAAAAGGACCTGCTAAGTCTCCAACAGCAAACAGGAGCAAGGAGGTGACCAGCCCGGACAGTAAGACCAAGCCTTCAGTTGGGTCAACCAAACAAAGCTCAGCAAGACCAAACTCGCTGTCCACTGGAGACAGTGCTGGTGCCACCAAACGTACCTCTCCCACCACCAACTCTGCCAATAAAAAAAGCCCTATGACCAAGGCAACAACCCCCACTGCTGGTACCAAGAAAACCCCCACCTCCACATCTACTCTTGAGACTAAGGCCAAGTCTTCTGAGACTGGCACAGCAACTCAGCGTCGCCCTCCAGTGCCAAAGGCTAAAGCTGCATCTGCTACTAACTCTAAAAACGGCACAAGCACCCCAGCTACCACCTCTGCCCGACCCTCCTCAGCTACAAAGACTGAAAACCAAGCAGGAGAGGTGAAAAAGGCACCAGTTAAAACAACTCCAAGGACAACTCGCACACCATCCTCTGCAACCAGCACAGCAGCCACCAATGGGACCCCGACCCCTCGTCCATCCCGCATCACCAAACCCCCCGTACCCAAGCAGACTCCCCTAGAGAGGAAGCCTCCTGTGCCTCGAGCCCCCCGGAACGTTCGGCCCACCAACGCACCGCTGCCGGATCTAAAAAACGTGCGCTCCAAGATAGGTTCCACCGATAACATGAAGTACCAGCCTGGAGGAGGCAAGGTCTCTGCAGCCCAGGGCAAGACCGATGCTCTGCCAAAGACCAGCCAGGGCAAAGTTCAGATAGTCCACAAAAAACTGGACTTCAGCCATATAACCTCCCGATGTGGCTCCAAGGACAATATCAAGCATGTACCTGGTGGAGGAAATGTTCAGATTTTAAGTAAAAAGGTTGACTTGAGCAAAGTGACCGCAAAATGTGGATCCAAGGACAACATAAAGCACAAGCCAGGTGGTGGTGAAGTGAAGATTGAATCCCATAAGGTGAATGTCAAGGCCAAGGCCAAAGTGGGATCACTGGACAATGTAGGCCATGAACCAGGAGGTGGCAATGTTAAAGTGGCAGGCAATGGGGCAAAAGAGAACGGGCTGAAAGAGAGCTCTCCTACTCCCGTACCTTCTTTGGGAGAAGGGCCCCGGGACTCCCAGGGCCTGGACAAGCGCATCCCTGGGACAACTTTTCAATTTCTTTGCTACCAGACTGAGTCCTACAAGCTGAACTTCCGCGAGAATGCACGAGCTCGCACGGACCACGGCGCTAAAATCATCTCCTGGTCCCCCCTGAGTGGCAGCCACCCCCACCCACATCGCAGCACCTCTCTCAGTGTTTCTCTGGGGTCCGCCATGTCCTCACACTCAACCTAGCTTGTCCCATTCACTCAGCCATGAGATGGGTGCAAACCAGCAGGAGAAGGGCGTTTCAACACAGCCTGTCCCTTTAAAACCCATCTTCTCATTAGCTTCTTTTCTTGGTTTCAGTTTTCTTTGTTTATTCCTTGCTGGGAGAGCACCTATGAGAACGCAGGGTTTGGTTTGAGGCTAGATTTGAGATGAAGTCTCCAGATGTTTGGAGATGGTTGGATGGTTGTCCAGCCGCATAGCTCTTAATATATCATTTTTGTTATAAGCACAGCTTTTAGCCTGTGAACACCGAGTTTCTTTCTAAACTTCCTACAAGCCTGTGTTGTCCATTAGAAAGACCTTAATTTAGAGGCAACACCCTCTTTTCTCTCTGTATCTGTTTGGCAGTAGATGTTCTCCAATGGGAACCCCAGAACTCACTCGAGATGTAGCTTATTACATCATATTATGGCAGTTAAGCTCCTTGTATTGTTAGTATGTGGGGCTGTCTTAAATCCCAGTCAAAAGGGACGAACCAGCCACCATCCATCCATCCATCTGCTTCCTTTGTTCCACTGACTTTGTCCACCTCACAAGAATTATACCGCTGGTCTCCCCTAGTATTTAAATGAGAACTTAATCATTTGAAACGTATAGGCTGTTCAAACAATAGCATATTTACATCTTCAATGAGTTTGCTGTATCGTGTTTGCGTAAATTACTGTAACAATGAGCTGTATCATTATGATGTCTAACCATCTGATTACATCTTCCGCTTTCCATTTCTCTCAAAGCATCTTGTGAACTAATAGGACACATGACACACATAAACTACAGCATGATACAGTAAGAGAAAAAGGCAGTGGCACGCAAACTAAACAGACAGGATGGAAAGGAATATAGATGGATAAAGAAAGATGTCAGAAAGTTAGAATGGAAATGTTTACACTCCGTACACAGGTCATGATTATTTGCTCAAAGGTCCAATTCATCCTTCACTTTGAATTAAGTATTGTACTTCCAAGTTCAACAAGTAGAAGACTTTTGCACTGAACATATAAACTGGCATGTGGGAGGGGCCATTACATTAACAGTAAATGGATCCTAACTAAGCATTAATGTAATGCAATACAGTGCATTTCCTTATTATTTATTCAATGGCAATTGATAAACTGTTGTTTAGAAATGACTATTTAATCAAACAGTAGGAAATGCTATTTGTTTGTTTGTTTTTTTACCAAGAGATGTATTATTCACAAAGTAGTTGAATATCATAGTTTTAAACTCTCCAAACCTACTATTGTAGGGCTGCTTTTTTGAAGCTCTTGACTAGTGACACTGTTTAACAGTGAATTTGTGGGCACTTTATTGGTAGTTATATTACTCTAGATATCTTTAGCCGCACAATGCCTGCAGAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07585030_07601316.mRNA True 4250 mRNA 0.48 14 7584727 7602713

Neighbor

gene id symbol gene type direction distance location
CI01000004_07568950_07581744 NA coding upstream 2055 7568950 ~ 7582672 (+)
CI01000004_07515025_07559926 KCNH2A, KCNH6, KCNH2 coding upstream 24326 7515025 ~ 7560401 (+)
CI01000004_07375432_07378296 NA coding upstream 206040 7375432 ~ 7378687 (+)
CI01000004_07366683_07372144 GORASP1, GORASP1A coding upstream 212289 7366683 ~ 7372438 (+)
CI01000004_07360794_07364249 CSRNP1A coding upstream 220128 7359772 ~ 7364599 (+)
CI01000004_07642418_07645369 FITM1 coding downstream 39648 7642361 ~ 7647147 (+)
CI01000004_07654234_07655677 MRPL34 coding downstream 51521 7654234 ~ 7656383 (+)
CI01000004_07686845_07692184 NR2F6, NR2F6A, NR2F6B coding downstream 83305 7686018 ~ 7693082 (+)
CI01000004_07712175_07712384 NA coding downstream 109462 7712175 ~ 7712402 (+)
CI01000004_07759670_07760529 RPS28P9, RPS28 coding downstream 156905 7759509 ~ 7761023 (+)
G28714 NA non-coding upstream 87863 7491896 ~ 7496864 (+)
G28686 NA non-coding upstream 146991 7437236 ~ 7437736 (+)
G28682 NA non-coding upstream 155965 7427242 ~ 7428762 (+)
G28379 NA non-coding upstream 196886 7387581 ~ 7387841 (+)
G28372 NA non-coding upstream 197328 7385044 ~ 7387399 (+)
G28710 NA non-coding downstream 17402 7620115 ~ 7633578 (+)
G28730 NA non-coding downstream 59194 7661907 ~ 7663273 (+)
G28731 NA non-coding downstream 62012 7664725 ~ 7664993 (+)
G28732 NA non-coding downstream 63359 7666072 ~ 7666828 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1010306 6570771 ~ 6572667 (+)
G28302 NA other upstream 1082640 6470028 ~ 6502087 (+)
G28165 NA other upstream 1851726 5732589 ~ 5733001 (+)
G27805 NA other upstream 2210924 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 4032281 3550329 ~ 3553423 (+)
CI01000004_08414451_08436256 NA other downstream 830992 8414316 ~ 8439933 (+)
G28859 NA other downstream 996522 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1373725 8976254 ~ 8980984 (+)
G30797 NA other downstream 2894663 10497376 ~ 10497788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G28792 NA non-coding NC_053114.1 CM020911.1 21073541 ~ 21073755 (+)
bowfin (Amia calva) AMCG00018988 NA misc CM030124.1 CM030124.1 225374 ~ 337633 (-)