Gene
RNA
| Item | Value |
|---|---|
| gene id | G28732 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 7666072 ~ 7666828 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU32491 | False | 757 | lncRNA | 0.32 | 1 | 7666072 | 7666828 |
| TU32488 | False | 547 | lncRNA | 0.53 | 1 | 7666282 | 7666828 |
| TU32485 | True | 366 | lncRNA | 0.35 | 1 | 7666463 | 7666828 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_07654234_07655677 | MRPL34 | coding | upstream | 10291 | 7654234 ~ 7656383 (+) |
| CI01000004_07642418_07645369 | FITM1 | coding | upstream | 20113 | 7642361 ~ 7647147 (+) |
| CI01000004_07585030_07601316 | NA | coding | upstream | 63359 | 7584727 ~ 7602713 (+) |
| CI01000004_07568950_07581744 | NA | coding | upstream | 83400 | 7568950 ~ 7582672 (+) |
| CI01000004_07515025_07559926 | KCNH2A, KCNH6, KCNH2 | coding | upstream | 105671 | 7515025 ~ 7560401 (+) |
| CI01000004_07686845_07692184 | NR2F6, NR2F6A, NR2F6B | coding | downstream | 19190 | 7686018 ~ 7693082 (+) |
| CI01000004_07712175_07712384 | NA | coding | downstream | 45347 | 7712175 ~ 7712402 (+) |
| CI01000004_07759670_07760529 | RPS28P9, RPS28 | coding | downstream | 92790 | 7759509 ~ 7761023 (+) |
| CI01000004_07775338_07780352 | ANGPTL4 | coding | downstream | 108414 | 7775242 ~ 7781318 (+) |
| CI01000004_07823292_07824588 | NA | coding | downstream | 156008 | 7822836 ~ 7826203 (+) |
| G28731 | NA | non-coding | upstream | 1079 | 7664725 ~ 7664993 (+) |
| G28730 | NA | non-coding | upstream | 2799 | 7661907 ~ 7663273 (+) |
| G28710 | NA | non-coding | upstream | 32494 | 7620115 ~ 7633578 (+) |
| G28714 | NA | non-coding | upstream | 169208 | 7491896 ~ 7496864 (+) |
| G28735 | NA | non-coding | downstream | 7569 | 7674397 ~ 7674628 (+) |
| G28736 | NA | non-coding | downstream | 8012 | 7674840 ~ 7675478 (+) |
| G28737 | NA | non-coding | downstream | 9464 | 7676292 ~ 7676497 (+) |
| G28752 | NA | non-coding | downstream | 75480 | 7742308 ~ 7742597 (+) |
| G28753 | NA | non-coding | downstream | 76113 | 7742941 ~ 7743193 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | upstream | 1091651 | 6570771 ~ 6572667 (+) |
| G28302 | NA | other | upstream | 1163985 | 6470028 ~ 6502087 (+) |
| G28165 | NA | other | upstream | 1933071 | 5732589 ~ 5733001 (+) |
| G27805 | NA | other | upstream | 2292269 | 5372825 ~ 5373803 (+) |
| CI01000004_08414451_08436256 | NA | other | downstream | 766877 | 8414316 ~ 8439933 (+) |
| G28859 | NA | other | downstream | 932407 | 8599235 ~ 8599603 (+) |
| CI01000004_08976512_08980033 | TTPA | other | downstream | 1309610 | 8976254 ~ 8980984 (+) |
| G30797 | NA | other | downstream | 2830548 | 10497376 ~ 10497788 (+) |
| G31710 | NA | other | downstream | 3970423 | 11637251 ~ 11642400 (+) |
