RNA id: TU32485


Basic Information

Item Value
RNA id TU32485
length 366
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G28732
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7666072 ~ 7666828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCCGAGGACATCGTGTGAAATCTTCGCTTTTGCTCTGCTTTATGAATACGTCAGCTGGGCTGATGCCGTCGTCGGCGCTGGTGCTGAAACTGCTCGGCCGGACCCAGAGAGGCTTCCCCAGCGGCGAGAGCCTTTTTCCTGATGCAAACAGGTGCAGAAAGTCCATTGACCGCTGAATAAATCGTCAATCACATTCTGACACTGATCATCCATGGCGCTATCAACACACGGCGGATTTCCTCATCATTTGTGAAGAGCTGTTTTTAGCTACCATTTATTCATACCCTATCTGGCCGCGTATTTCTCTGTATTTCTGTTTTGTTTACCAGTAACTTCTTGTCAGTAAGTTGCTGTATGCGCCATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32484 lncRNA upstream 1470 7664725 ~ 7664993 (+) True G28731
TU32483 lncRNA upstream 3190 7661907 ~ 7663273 (+) True G28730
TU32453 lncRNA upstream 18442 7647287 ~ 7648021 (+) True G28705
TU32462 lncRNA upstream 32885 7620115 ~ 7633578 (+) True G28710
TU32467 lncRNA upstream 169599 7491896 ~ 7496864 (+) True G28714
TU32494 lncRNA downstream 7569 7674397 ~ 7674628 (+) True G28735
TU32495 lncRNA downstream 8012 7674840 ~ 7675478 (+) True G28736
TU32496 lncRNA downstream 9464 7676292 ~ 7676497 (+) True G28737
TU32512 lncRNA downstream 75480 7742308 ~ 7742597 (+) True G28752
TU32513 lncRNA downstream 76113 7742941 ~ 7743193 (+) True G28753
CI01000004_07654234_07655677.mRNA mRNA upstream 10682 7654234 ~ 7655781 (+) False CI01000004_07654234_07655677
CI01000004_07642418_07645369.mRNA mRNA upstream 20504 7642361 ~ 7645959 (+) False CI01000004_07642418_07645369
CI01000004_07585030_07601316.mRNA mRNA upstream 63750 7584727 ~ 7602713 (+) True CI01000004_07585030_07601316
CI01000004_07568950_07581744.mRNA mRNA upstream 83791 7568950 ~ 7582672 (+) True CI01000004_07568950_07581744
CI01000004_07515025_07559926.mRNA mRNA upstream 106062 7515025 ~ 7560401 (+) True CI01000004_07515025_07559926
CI01000004_07686845_07692184.mRNA mRNA downstream 19190 7686018 ~ 7693082 (+) True CI01000004_07686845_07692184
CI01000004_07712175_07712384.mRNA mRNA downstream 45347 7712175 ~ 7712402 (+) True CI01000004_07712175_07712384
CI01000004_07759670_07760529.mRNA mRNA downstream 92790 7759618 ~ 7760997 (+) False CI01000004_07759670_07760529
CI01000004_07775338_07780352.mRNA mRNA downstream 108414 7775242 ~ 7781318 (+) True CI01000004_07775338_07780352
CI01000004_07823292_07824588.mRNA mRNA downstream 156008 7822836 ~ 7826203 (+) True CI01000004_07823292_07824588
TU32454 other upstream 10080 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1092042 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1164376 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 1933462 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2292660 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 766877 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 932407 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1309610 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1309610 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2830548 10497376 ~ 10497788 (+) True G30797

Expression Profile