G37911


Basic Information

Item Value
gene id G37911
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3483651 ~ 3542977 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU43003
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGTGTGAGTGTGTGTGGGTGTACATACATGGTTACCAATACAGAAGTTTTGTTTGCTTAAGCTGGCAAAATGACCACAGTTATCCAGCAGATCAGAGACTGAGATTGCTTCCTCTCTTTTAATGTTTTGTTTTTCATATCCTTTTTGTGCTCTACGTGTTTTTATATAATGGAACTACTGCTTTGAAGAAAATCTACTTTTGAGAACCCATTTGCACAGAACTTCCAGATTTCCAATCTGTGCATTTGTACTGGACCACACGAATCACTTTTTGTTTTATTTCAGCTGTTTACTTATTTTATTGTTATTATTATTTCCATCTGTCGATTTTTGCCTCATTTGATAAAGTGTTTCTATGTGGCACAAGCCTTTTATTTTGCACTGAATACATCAGAAACATTCATCTCCTCTGCTCTTCGAGAGCAGACATGTTGAAAAAGTGAAAGCTACATCACACCTCAGACCATGAAACTGAAGTGAGTCTTACGGTTGAGCACTGCAGAGTGGACGGTAATGTCAGCGCCACTCTGCGGATGTGATCGAGTAGAAATGCATTTAAGAAAAAAAAAACTCCACTTGATTCATTTTTTATGTTTTACTGTAAGCTTCTTTTTATTTTTTGTTGTTGAAAAGAAAATAGTATTTACTTGTGGCTTTTAAAATATATATAAAAAATATATATCTAAAAAAAATATATAAAGCAGGAATGTATATGAATTGTCAAATTTTACTTGTATTTTGGAAGAGATAGTAATGGTATTATAGAGGGCTATTTGTAGGAAAGAAAAATATGCATCATAGCAGCTTTATAGCACCATGTTAGAAAATTTCCTATATTTTTGGATATATGTTAGGGCTTTATATATGAATGACAGGACTTTTTCAATGTTTATATGCAAAAGCATTTTATATTATGTGTCCTGTGATAGTCTGAGGGGTAAAGGCTAAAAGTCCCACAGCTTGAATTTCCATGGCTATTATGCTAGAAAATACCTTGTAGTGTTGCTTTGTACCATTAAGGCCAAGATTTTTATGTTGTTGTAAATAGAACAAAAAAGGCAATAAAAATTTTTATTGAATAAAAAACGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU43003 True 1140 lncRNA 0.39 2 3483651 3542977

Neighbor

gene id symbol gene type direction distance location
CI01000005_03439939_03442430 NA coding downstream 40458 3439939 ~ 3443193 (-)
CI01000005_03412228_03417948 YIPF3, YIPF3.L coding downstream 64994 3412003 ~ 3418657 (-)
CI01000005_03400313_03405169 NA coding downstream 78482 3400294 ~ 3405169 (-)
CI01000005_03384625_03397017 LRRC73 coding downstream 86634 3384350 ~ 3397017 (-)
CI01000005_03175712_03183326 NA coding downstream 300325 3175582 ~ 3183326 (-)
CI01000005_03714714_03715575 NA coding upstream 171296 3714273 ~ 3715641 (-)
CI01000005_03986570_03989555 PRPH2B coding upstream 443122 3986099 ~ 3989555 (-)
CI01000005_04161239_04162612 NA coding upstream 617995 4160972 ~ 4163246 (-)
CI01000005_04296779_04299727 NA coding upstream 753661 4296209 ~ 4299810 (-)
CI01000005_04332499_04357527 XPO5 coding upstream 789513 4332490 ~ 4358857 (-)
G38005 NA non-coding downstream 15497 3467681 ~ 3468154 (-)
G38002 NA non-coding downstream 22942 3460120 ~ 3460709 (-)
G38001 NA non-coding downstream 23844 3459571 ~ 3459807 (-)
G37999 NA non-coding downstream 25447 3457934 ~ 3458204 (-)
G37908 NA non-coding downstream 55786 3323254 ~ 3427865 (-)
G38050 NA non-coding upstream 132208 3675185 ~ 3675497 (-)
G38060 NA non-coding upstream 166116 3709093 ~ 3723808 (-)
G38068 NA non-coding upstream 190153 3733130 ~ 3782702 (-)
G38095 NA non-coding upstream 235301 3778278 ~ 3778979 (-)
G38136 NA non-coding upstream 301499 3844476 ~ 3849365 (-)
CI01000005_01883894_01899867 NA other downstream 1594375 1883222 ~ 1899867 (-)
G36628 NA other downstream 1819372 1663267 ~ 1664279 (-)
G36049 NA other downstream 2439979 1021295 ~ 1043672 (-)
G38510 NA other upstream 661868 4204845 ~ 4206208 (-)
G38415 NA other upstream 838261 4381238 ~ 4401110 (-)
G39515 NA other upstream 2290815 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 2937712 6481355 ~ 6483265 (-)
G40487 NA other upstream 3652818 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 misc NC_047597.1 CM018543.1 22485310 ~ 22552752 (+)