G140256


Basic Information

Item Value
gene id G140256
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9941354 ~ 9942179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189869
gtagtgctggacgatatggccaaaatttatatcacgatatattccttaaatttcggtcgatacgatataatttcgatatcgatataaatactttgaaggcctcagaaaactgctaagaagccctgcaatccctgcagcactgcgaatttaaattattatataactgtgtatttgcactttttgtatggttggcatcagataccctcattatatgcacatctatctatctatctacctatctatctatctatctatctatctatctatctatctaatggaaatctgtacctactactgtctgaaaatttaatttaagcctttgaaacctcctttcacaaaaactttaatactttagaaataaaagtagtcaaaataaatcaatgctcaatattatttgcatatagcaaactaataacatgacatccctgtcaaacataagcctatataactattaccaataaaaataactttaaattacaacagaggcagagcttcttattctttgtgaacaaatttaacagattaaaacaaaagtgtttcaactaggatatagaatacaataagcctttatatacgtaaaagcaacaagattttcccgtcaaataaacaaacctacaggctttatcaactatgaataacttagttacaacataagctataaaagtgcttcagtcagtataagaaaaatattgtatgtagtggagttgcttgaagtggtggaacagtttagatgtattaacattaccgctgctggtcggctgcactctccggcacaatttgcagcaaagcggcaagggagcggacccgcggccggcctcgaggatcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189869 True 826 lncRNA 0.34 1 9941354 9942179

Neighbor

gene id symbol gene type direction distance location
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding downstream 79562 9850225 ~ 9861792 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding downstream 111201 9822515 ~ 9830153 (-)
bfsp2 bfsp2 coding downstream 179852 9752664 ~ 9761502 (-)
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding downstream 269140 9574340 ~ 9672214 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding downstream 377767 9532823 ~ 9563587 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding upstream 210592 10152771 ~ 10160390 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding upstream 246619 10188798 ~ 10192684 (-)
LOC103032176 nadk,LOC108444346,LOC107557499,LOC107591341,LOC107738176,LOC107659414 coding upstream 308054 10250233 ~ 10267983 (-)
skil skil coding upstream 337373 10279552 ~ 10303528 (-)
LOC103037547 NA coding upstream 429229 10371408 ~ 10394166 (-)
G140250 NA non-coding downstream 15400 9925442 ~ 9925954 (-)
G140237 LOC108430268 non-coding downstream 53369 9885190 ~ 9887985 (-)
G140227 NA non-coding downstream 64824 9875946 ~ 9876530 (-)
LOC111194301 NA non-coding downstream 91808 9847581 ~ 9849546 (-)
G140214 NA non-coding downstream 119393 9821304 ~ 9821961 (-)
G140257 NA non-coding upstream 11324 9953503 ~ 9953822 (-)
G140261 NA non-coding upstream 50518 9992697 ~ 9993132 (-)
G140351 NA non-coding upstream 165532 10107711 ~ 10116183 (-)
G140354 NA non-coding upstream 207695 10149874 ~ 10152437 (-)
G140347 NA non-coding upstream 225680 10167859 ~ 10169699 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 227317 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 1230255 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2758571 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 2997220 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 3251631 6564903 ~ 6689723 (-)
G140342 NA other upstream 93224 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 368918 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 568910 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1664056 11606235 ~ 11610529 (-)
G140975 NA other upstream 2231516 12173695 ~ 12174994 (-)

Expression


Co-expression Network