Gene
RNA
| Item | Value |
|---|---|
| gene id | G44850 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 7320374 ~ 7320695 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU50982 | False | 322 | lncRNA | 0.48 | 1 | 7320374 | 7320695 |
| TU50981 | True | 255 | lncRNA | 0.26 | 1 | 7320441 | 7320695 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_07254728_07260352 | NA | coding | upstream | 59940 | 7254261 ~ 7260434 (+) |
| CI01000006_07249033_07250723 | NA | coding | upstream | 69479 | 7248438 ~ 7250895 (+) |
| CI01000006_07243073_07247934 | GHR | coding | upstream | 72352 | 7243073 ~ 7248022 (+) |
| CI01000006_07214841_07222648 | C6 | coding | upstream | 97557 | 7214841 ~ 7222817 (+) |
| CI01000006_07208843_07212249 | RGS7BPB | coding | upstream | 107536 | 7208480 ~ 7212838 (+) |
| CI01000006_07328380_07352585 | NA | coding | downstream | 7288 | 7327983 ~ 7353137 (+) |
| CI01000006_07458458_07460310 | ATP5I, ATP5IA | coding | downstream | 137418 | 7458113 ~ 7460310 (+) |
| CI01000006_07477200_07478617 | RBP4L | coding | downstream | 156233 | 7476928 ~ 7478786 (+) |
| CI01000006_07486574_07490054 | SLC26A1 | coding | downstream | 165283 | 7485978 ~ 7490576 (+) |
| CI01000006_07492187_07498391 | NA | coding | downstream | 171492 | 7492187 ~ 7498674 (+) |
| G44857 | NA | non-coding | upstream | 51 | 7320068 ~ 7320323 (+) |
| G44856 | NA | non-coding | upstream | 441 | 7319715 ~ 7319933 (+) |
| G44855 | NA | non-coding | upstream | 2076 | 7318083 ~ 7318298 (+) |
| G44854 | NA | non-coding | upstream | 3882 | 7316171 ~ 7316492 (+) |
| G44853 | NA | non-coding | upstream | 4394 | 7315721 ~ 7315980 (+) |
| G44859 | NA | non-coding | downstream | 5003 | 7325698 ~ 7325942 (+) |
| G45116 | NA | non-coding | downstream | 152007 | 7472702 ~ 7472906 (+) |
| G45120 | NA | non-coding | downstream | 158614 | 7479309 ~ 7479512 (+) |
| G45122 | NA | non-coding | downstream | 160994 | 7481689 ~ 7481888 (+) |
| CI01000006_07167131_07168925 | NA | other | upstream | 149840 | 7166778 ~ 7168925 (+) |
| CI01000006_06122278_06122736 | NA | other | upstream | 1191699 | 6122035 ~ 6122751 (+) |
| CI01000006_06104927_06109730 | NA | other | upstream | 1210786 | 6104927 ~ 6109820 (+) |
| G43896 | NA | other | upstream | 1548599 | 5770089 ~ 5771775 (+) |
| G41996 | NA | other | upstream | 2196225 | 5117206 ~ 5124149 (+) |
| G44872 | NA | other | downstream | 35657 | 7356352 ~ 7387884 (+) |
| G45178 | NA | other | downstream | 301296 | 7607604 ~ 7683671 (+) |
| G45265 | NA | other | downstream | 563172 | 7883867 ~ 7920355 (+) |
| G45336 | NA | other | downstream | 698647 | 8019342 ~ 8021951 (+) |
| CI01000006_08198328_08199463 | NA | other | downstream | 838821 | 8197881 ~ 8200145 (+) |
