G213240


Basic Information

Item Value
gene id G213240
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 1995847 ~ 1999106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289504
cccccgccccccctcccccgttggacagataaaaaacagtgatcacactcccgccgactgcgctcatgcagtggctatctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagatcgtgacctcatttcgattcgatttcgataaaatatcgagatcgtgacacccctaatatatatatatatatataagaccaattggtacttttggcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatccacatctccataaaagttgtcagtagcagagggaagcaggaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgatgataaaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgattggtggaaacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgatcccttgatttacaaatgaaatgtaaaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289504 True 576 lncRNA 0.46 2 1995847 1999106

Neighbor

gene id symbol gene type direction distance location
nr3c2 nr3c2,LOC107598757 coding upstream 95753 1690077 ~ 1900094 (+)
tnip2 NA coding upstream 620996 1365801 ~ 1374851 (+)
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding upstream 1467784 519187 ~ 528063 (+)
hand2 hand2,LOC107676684,LOC107558779,LOC107552491 coding upstream 1527185 465499 ~ 468662 (+)
hpgd hpgd,LOC107552502,LOC107752225,LOC107737128,LOC107676678,LOC107558775 coding upstream 1826787 135827 ~ 169060 (+)
prmt9 prmt9 coding downstream 100384 2099490 ~ 2122451 (+)
znf827 znf827 coding downstream 724492 2723598 ~ 2897529 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding downstream 1377745 3376851 ~ 3441060 (+)
LOC103022278 NA coding downstream 1455842 3454948 ~ 3475096 (+)
LOC103021981 NA coding downstream 1480378 3479484 ~ 3499830 (+)
G213166 NA non-coding upstream 67316 1906251 ~ 1928531 (+)
G213222 NA non-coding upstream 75621 1859440 ~ 1920226 (+)
G213167 NA non-coding upstream 92709 1846407 ~ 1903138 (+)
G213241 NA non-coding downstream 857 1999963 ~ 2002593 (+)
G213293 NA non-coding downstream 123917 2123023 ~ 2123277 (+)
G213294 NA non-coding downstream 131735 2130841 ~ 2131333 (+)
G213305 NA non-coding downstream 503878 2502984 ~ 2503208 (+)
G213307 NA non-coding downstream 514308 2513414 ~ 2513621 (+)
LOC103042715 NA other upstream 644451 1340751 ~ 1351396 (+)
scrg1 NA other upstream 1484288 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 1746116 229235 ~ 249731 (+)
LOC103044168 NA other downstream 1294822 3293928 ~ 3358194 (+)
G213555 NA other downstream 1689463 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 1901136 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 2399479 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 2511833 4510939 ~ 4590452 (+)

Expression


Co-expression Network