CI01000009_02601021_02609375 (DDX3X, DDX3A)


Basic Information

Item Value
gene id CI01000009_02601021_02609375
gene name DDX3X, DDX3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2601021 ~ 2609377 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02601021_02609375.mRNA
CAGGAAATGCTTATTCCTCTGGTAGACAGAGCGGTTATTCAGTGGCACCAGTACAGAGCTTTTCTCCCAAACAGTATCCTCAGAGTTGGCACCCTGAGGGAAACCAAAGATACAGGCATAACTGTCCAACTGGATGGAATGACTTTAGGACCGGTTCCCAGAGATATCCGTCCCAGGAGCTCTCATTTTATCACACCTACACTAGTGGCTGGCCGGACAGATGTGCCTCTCCTGCGCGTACCGACAGCAGTGTAGCCACCGATGGAAATGAGGACGCAACCAGTGTTATCAGCTGGGCTGATCGCTGTGGTAAATTAGAGCAACGGACGGTGGCATGGCTTGGCCTGCTTTTGCCAGTTTTCAGACAGAAAATGATCACCCATTTATGTGATTCTCCAGGATGGGACGGCGGTCGTAGCAATGGTTTCGTCAATGGGTATCATGATGGTCGTATGAATGGGACTGCAAACTTTGGCCGTGGACCTCCTCGCAATGACAGAGGAGGACGTGGTAGCTTTCGTGGAAGCAGGAACGGTGGTTCCTTCAACCAGCCAATGCATAATGCAGGTTATGGCACTTATGAGAACAAAGATGGAGGCTGGAACTCAGTGGTAAACAGAGATGCCTACACTAGCTTTGGTGGGCGTTCTGACAGAGGGAAGTCTGCGTTCTTCAATGACAGGGGAGCTGGCTCAAGAGGAAGATATGAGCGTGGAGGCTTTGGAGGAGGAACAGGAGGGAACAGTCGTTGGGTTGAAGAGTCCAGAGATGAAGAGGACTGGTCAAAGCCAATGCCCCCCAACGAGCGTCTAGAAAATGAGCTGTTCTCTGGGAGCAACACAGGGATTAACTTTGAGAAGTATGATGACATTCCTGTGGAGGCCACTGGAACAAACTCTCCTGGGCATATTGAGAGTTTCCATGATGTGGATATGGGCGAGATCATTATGGGCAACATCAACTTAAGCCGCTATACACGCCCTACTCCTGTTCAGAAGTATGCAATCCCCATCATCAAGGCCAAGAGGGACCTGATGGCCTGTGCACAAACAGGCTCGGGGAAGACTGCAGCCTTCCTGCTTCCTGTTCTCAGTCAGATCTACACTGATGGACCTGGAGAGGCACTGCAGGCCACCAAAGCCAGCGCTCAGGAGAATGGAAAGTACGTCCGTCGTAAGCAGTTTCCCATCTCTCTAGTCCTGGCTCCAACCAGAGAACTTGCTCTTCAGATTTATGATGAGGCCAGAAAGTTTGCTTATCGCTCCAGAGTGCGCCCGTGTGTAGTATACGGAGGCGCAGATATAGGCCAGCAGATCCGTGATTTGGAAAGAGGCTGTCACCTGCTAGTGGCCACACCTGGTCGTCTGGTAGACATGATGGAGCGAGGCAAGATTGGCCTGGACTACTGCAAATATCTGGTGTTGGATGAGGCAGACAGAATGCTTGATATGGGTTTCGAACCCCAGATCAGACGTATTGTGGAGCAGGACACCATGCCTCCAAAAGGTGCTCGTCAGACCATGATGTTCAGTGCCACCTTCCCGAAAGAGATCCAGATTCTGGCCCGTGACTTTCTGGAGGAGTACATCTTCCTGGCTGTGGGCCGCGTGGGCTCCACCTCAGAGAACATCACCCAGAAAGTGGTTTGGGTGGAAGAGAATGACAAGCGCTCCTTCCTCCTCGACCTGCTCAATGCCACAGGCAAGGATTCTCTCACACTGGTGTTTGTGGAGACTAAGAAGGGTGCCGACGCTCTTGAGGACTTCCTCTACCGCGAGGGCTATGCCTGCACCAGTATCCATGGCGACCGCTCTCAGCGTGATCGTGAGGAAGCGCTCCAGCAGTTCCGTTCTGGACGCTGCCCTATCATGGTTGCCACTGCTGTGGCTGCACGTGGCCTGGACATCTCCAATGTGAAACACGTGATCAATTTTGACTTGCCCAGTGACATTGAGGAATACGTCCACCGCATTGGTCGTACAGGCCGTGTGGGAAACCTTGGGCTGGCCACATCCTTCTACAATGATAAGAACAGCAACATCACTAAAGATCTGCTGGATATCTTGGTGGAGGCCAAACAGGAGGTGCCTTCCTGGCTTGAGAACCTAGCCTACGAGCACCAGCACAAGAGCACCAACCGTGGGCGACCCAAAAGATTCTCTGGTGGCTTTGGAGCCAGGGATTACCGCCAGATGGCTGGGGGTGGAAACACTTTTGGCAACCGTGGTGCTCGCAGTGCTGGTGGCCATGGAGGGAACAGAGGTTTTGGAGGCAATAAGGGTGGCTTTGGGAGTTTCGGCGGTGACAGCTACGGGGGCAACTATGGAAACTATGGAGGAAACTATGCCCAGGTGGACTGGTGGGGCAACTAAAA

Function

symbol description
ddx3x Enables several functions, including helicase activity; nucleic acid binding activity; and nucleoside-triphosphatase activity. Involved in several processes, including positive regulation of type I interferon production; regulation of cellular protein metabolic process; and regulation of signal transduction. Located in several cellular components, including cell leading edge; centrosome; and cytoplasmic stress granule. Colocalizes with cytosolic small ribosomal subunit and eukaryotic translation initiation factor 3 complex. Implicated in syndromic X-linked intellectual disability.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11594 DDX3X, bel; ATP-dependent RNA helicase DDX3X

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02601021_02609375.mRNA True 2374 mRNA 0.53 19 2601021 2609377

Neighbor

gene id symbol gene type direction distance location
CI01000009_02596511_02597101 NA coding upstream 3909 2595966 ~ 2597112 (+)
CI01000009_02572388_02587828 USP9, USP9X coding upstream 12970 2572388 ~ 2588051 (+)
CI01000009_02499173_02519062 DOPEY2 coding upstream 81866 2498969 ~ 2519155 (+)
CI01000009_02479541_02488142 VANGL1 coding upstream 112262 2479541 ~ 2488759 (+)
CI01000009_02449805_02450173 NHLH2 coding upstream 150665 2447997 ~ 2450356 (+)
CI01000009_02615073_02617401 NYX coding downstream 5279 2614656 ~ 2618195 (+)
CI01000009_02656782_02657768 NA coding downstream 47180 2656557 ~ 2657823 (+)
CI01000009_02667840_02668883 NA coding downstream 58065 2667442 ~ 2669164 (+)
CI01000009_02674026_02678655 NA coding downstream 64425 2673802 ~ 2678746 (+)
CI01000009_02713403_02713914 NA coding downstream 103581 2712958 ~ 2713998 (+)
G51368 NA non-coding upstream 172699 2428122 ~ 2428322 (+)
G51354 NA non-coding upstream 175738 2415700 ~ 2425283 (+)
G51272 NA non-coding upstream 199654 2401033 ~ 2401367 (+)
G51270 NA non-coding upstream 200127 2399778 ~ 2400894 (+)
G51358 NA non-coding upstream 232607 2368182 ~ 2368414 (+)
G51394 NA non-coding downstream 22400 2631777 ~ 2633862 (+)
G51470 NA non-coding downstream 213585 2822962 ~ 2823706 (+)
G51388 NA non-coding downstream 231033 2840410 ~ 2844319 (+)
G51495 NA non-coding downstream 292097 2901474 ~ 2901723 (+)
G51496 NA non-coding downstream 292570 2901947 ~ 2902312 (+)
G51274 NA other upstream 250535 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 699595 1897343 ~ 1919516 (+)
G51122 NA other upstream 919055 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1162666 1429873 ~ 1435328 (+)
G50920 NA other upstream 1830788 769841 ~ 770233 (+)
G51529 NA other downstream 452656 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 593395 3202207 ~ 3208984 (+)
G53388 NA other downstream 2912865 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3250925 5931718 ~ 5943899 (+)
G53651 NA other downstream 3636187 6245564 ~ 6248392 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding CM030128.1 CM030128.1 28289355 ~ 28315398 (-)