CI01000009_02615073_02617401 (NYX)


Basic Information

Item Value
gene id CI01000009_02615073_02617401
gene name NYX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2614656 ~ 2618195 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02615073_02617401.mRNA
TTATATAAGGAGATTGCAGACTGTAATCTGCATGTACTATTGAGGCCCAGGGTCATTTCTGCTTGCTTTGATTTCAGAGTACTGCTTTAAACGCTTATAATCCTAGGATTTTTCTGCCATTAAGTGATGGCTTTCTGAAGGGGAGTTCTGGTGTTAGTGGATGTGTACACACATACAAACACAAATGCTGAGCGATAGAGCCTTTAATCCATTCATATTTTCACTTGGAGTGAAGCGGTACAGACATAGTCATGTTGGGCAAACTTGTGGATGCACTTTTGTCAGTGCAGATGGAACATTTTATTTGATGCCAAGATGTTCAGCAATTGTTTTTGAAATGTCTTCGTGGAAATTTAGAAGTTAATTTGCAAAATATTTCATGTTATCTTAAAAATCCACAGCTGAGAGAAACCAGTTATGTGTTCCGTCGCAATTGCTGTGTATGTCCTCCTCCTCCTCCTCCCCTCTCAGACCCTGGCCCTGTGGGCCTGCACTCGCTCCTGCCCTCCCAGTTGCACGTGTACTCAGGAGAAGAGCTGCAGTGTCCTGTGTGACCACGTCAACATGATGGACCTGCCCAAAGAGTTCCCATGCGAGGCGTCCTCCATCAACCTGGACAAGAACAGCCTAAAGTTTCTGTCCGAGCGAGCCTTTGGCACCCTGCCTTCGCTCAAGACACTCTCTCTCGACCACAACAACATCTCCTTCATTACGCCAGGAGCATTTAAAGGGCTGCCCAACCTGGTAGAGCTGAGGCTGGCCCACAACGAGTATATCCGATACCTGCACACTCGCACCTTCACGGCACTCAAACGATTGGTGCGCTTGGACGTTTCCGACTGTAACCTGTTCAACATGCCAGACCGGATCTTCTTGGAGCAAATCTCCCTGAAGGAACTGCTGTGTTTCCAAAACAACTTTCGACGCATTCCCGGTGCCATACGGGGGATGGAAAACCTCACACACGTTTACTTGGAGCGCAACAAGATTGAAGCGGTGGCCTACAACTCTTTGTTGGGCCTAACCAACCTCAAGTACCTCAACTTACAGGAGAATCGCATAAACGTGATACATGACGAGGCTTTCAAAGATTTAGTGCATCTGGAGAACTTCTACCTGAATGATAATCTGTTGGTTGACTTGCCCCAGCAGGTTTTCAAGGGCCTAAGCAACTTGAAAATGTTGAATCTGGGTGGGAACCTGATGACCAATATCTCCAAATCATGGTTCAGTGACCTGGTGGAGCTGGAGGTGCTGTACCTGGATCGAAACCGCCTGTCCTATATCGAGGAGGGCGCCTTTGAGAACCTGACGAGCCTCATCACGCTGCACCTCAACAGCAACAATCTGACGTCTCTGCCCTTCTCCGTCTTCCAGCCCATCTATTTCATCGGCCGTCTGTATCTCTTTCGAAACCCCTGGGAGTGTACCTGCGACCTGGAGTGGTTGAAGGAGTGGATGGAGAGCTATAAGTTGGTGAGGGACATCCCATGTGCATCCCCGTCCTCAGTGGCCGGCTTGGACCTGAGCGAAGTTGTCTACGCCCATCTGAACGGCACCTGTCTGGATCCTCCAGAGCTCAACCTGACCACATCTCTTCCTGACTACCCTACCATGGAGAACAAGTTCAACAGCCTAATCTCCAAACTGCTACTGCAGGAACAGATGGACGAGATGGTTAACACCACGGACGGTCTGAGGAACGGCACCCAACAGGACCCCGCCGAGAGTCAGGTTTCTTCTGGACATGGACTGTTCGGTGCTGCTCAGACTGTGTTTCTTCTTGTGTTTCTTTTTCAAGCCCAGATTGACTGCATTAATGCGTCTTGAGAGTCTAGTGAATACTAAAAGGGGTTGAAGCACATTCAAGAGTGGAAATAATTTCCCAGTAGTTGGATGGGAAACGTTTGGATGAAATGTTTGATCCATCTTGCCATGAGCAGTGCGTTTTCTCATGTTGAAAATGAAATTCTGGCAGATATAATGGAGTTGGAGATGATCGTCTCTTTAAATGAGTGGAAACTGGTCTTGAAGGGAAAGGAGTATGTTTTAAGCCAATGAGACTCTAAAAGACTTTGTGTCAATATGAAAGGCTTTATTTAAGTATAACTGAGGGCCATTTTGTGAGACCTGCAACTAGTGGCACAAATGTTTTTACACCATTTTTTTTTATTTAGATTTGATTTTAAAAAATCTTGATAACGCATCTTTAGTATTAATACGTTTGTACATGTTCTGTTGCGTAACTTTGAAACATTTGTTGTGTAGGAGATTTATCTGATAAAGCTTCTCACTATCATTTCAGCAGATGGCATAACACACTGTCCTCTATTGTTTGGTTCATTGAACTGAAGTTTCCAGTTCTGGAAAATGCATTAGTCTTCCTATTCCATAAAGCTTAAGTGCACTCTGTAACATAAGCTGCTTCATACTGTAACCAAATGAATTGGCTTTATCACCATATACTTTATGACCATATATTTTCTCTATACAGAAAGCAATGTGCATAGAAGGATGATGTCATGCTCCGAGCTATGAGCTTCTGAGCTATGCATTAGATTTGTGTAAGAACCCTTTTAATTGTTTTAATACAGATTTTTGTTCATTTGTGATTAATACTTTGA

Function

symbol description
nyx Acts upstream of or within optokinetic behavior and visual perception. Is expressed in retinal ganglion cell layer; retinal inner nuclear layer; retinal inner plexiform layer; and retinal outer plexiform layer. Used to study congenital stationary night blindness and congenital stationary night blindness 1A. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1A and night blindness. Orthologous to human NYX (nyctalopin).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08129 NYX; nyctalopin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02615073_02617401.mRNA True 2624 mRNA 0.45 2 2614656 2618195

Neighbor

gene id symbol gene type direction distance location
CI01000009_02601021_02609375 DDX3X, DDX3A coding upstream 5279 2601021 ~ 2609377 (+)
CI01000009_02596511_02597101 NA coding upstream 17544 2595966 ~ 2597112 (+)
CI01000009_02572388_02587828 USP9, USP9X coding upstream 26605 2572388 ~ 2588051 (+)
CI01000009_02499173_02519062 DOPEY2 coding upstream 95501 2498969 ~ 2519155 (+)
CI01000009_02479541_02488142 VANGL1 coding upstream 125897 2479541 ~ 2488759 (+)
CI01000009_02656782_02657768 NA coding downstream 38362 2656557 ~ 2657823 (+)
CI01000009_02667840_02668883 NA coding downstream 49247 2667442 ~ 2669164 (+)
CI01000009_02674026_02678655 NA coding downstream 55607 2673802 ~ 2678746 (+)
CI01000009_02713403_02713914 NA coding downstream 94763 2712958 ~ 2713998 (+)
CI01000009_02799246_02827589 NA coding downstream 180836 2799031 ~ 2827640 (+)
G51368 NA non-coding upstream 186334 2428122 ~ 2428322 (+)
G51354 NA non-coding upstream 189373 2415700 ~ 2425283 (+)
G51272 NA non-coding upstream 213289 2401033 ~ 2401367 (+)
G51270 NA non-coding upstream 213762 2399778 ~ 2400894 (+)
G51358 NA non-coding upstream 246242 2368182 ~ 2368414 (+)
G51394 NA non-coding downstream 13582 2631777 ~ 2633862 (+)
G51470 NA non-coding downstream 204767 2822962 ~ 2823706 (+)
G51388 NA non-coding downstream 222215 2840410 ~ 2844319 (+)
G51495 NA non-coding downstream 283279 2901474 ~ 2901723 (+)
G51496 NA non-coding downstream 283752 2901947 ~ 2902312 (+)
G51274 NA other upstream 264170 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 713230 1897343 ~ 1919516 (+)
G51122 NA other upstream 932690 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1176301 1429873 ~ 1435328 (+)
G50920 NA other upstream 1844423 769841 ~ 770233 (+)
G51529 NA other downstream 443838 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 584577 3202207 ~ 3208984 (+)
G53388 NA other downstream 2904047 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3242107 5931718 ~ 5943899 (+)
G53651 NA other downstream 3627369 6245564 ~ 6248392 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037273 nyx coding NC_007120.7 CM002893.2 33357011 ~ 33361199 (+)