CI01000009_02667840_02668883


Basic Information

Item Value
gene id CI01000009_02667840_02668883
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2667442 ~ 2669164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02667840_02668883.mRNA
GTAAATAGAGAGACGCTGCACAAACGCAAGTAATTCACACACGCATCTCTCTCTCTCGATAATTAATTCAAATAAATGCTATAATTCATTCAAGTAAATGTAATCATACTCACTACTTTATCTGTCTGATTTAAATGGGCAGAATGCTAGAGCCATAACTAACGGAAATAACCGTCATTTTTACCCTTCTAGAGAAATATTGCACTGCAAACATCAAAAATAGCTTTAAGTTGTCAATGCTGGCAAATGGCCATCGTATAAGTGGGATAATCCACAGCTAGCTAGATTTTTAATGTATGTATACACACAGATTGAGTAAATGGAAAGCTGAGTTGGGTTGCTCATTTCCATCCAGAGATGTTTTCATTTCCTTCTCTCTTTATTTCTGTAGCATATGCATGATACTTCCTGAAGAAATCCATCAAACCATCTTGCCTTGGCTCTATCTCTGTCTGGCTGCCCTGGGCCTTCCAACCAATGGAATAGTCTTGGTGGATCTTTGGAGATCAGAGAGGACACCCACTGTCATCTTCACTTTGAACTTAATCGTGTCAGACCTGCTGATGTGCAGCAGTTTTTTCTTCAGAATAGCCTACTACAAAGAGAACATCAAATGGCTATCTGGAACTCCAGCCTGCAATGTAGTAGAGCTGATCAATTTTTCTTGCTTCTACATTAACCTCTATTGCAACATGAGCTTCCTTTTGTGGACCAGCATCAATCGCTACGTCACAGTGGTAAAACCAAGCTATGCTTTCTTTCAGATCTTTAAACATACTCGGTCTAGTTGGATCCTCTGCTTTTCTACCTGGTCAGTTGTCACCACAGTCGTCTGCACTAGCATGGGGCTTAAACTGGGCCGACAAATCAATGGGACCTGCTTTGACCAAGTTGTCAACAGTTACACTGTCTATCAAGATAGATTCAAAACTATACACTGTGTAGGTGTGTCAGCATTCTTCTTCATTTTGGGCTTGATGTTGGTCAGCTATAGCCTGCTGGTCTTCCATCTGCAGAAGGTGAGGGGAGGTAGATTTGGACCCGGAGGAAGTCTAAAGGTTCGCAGGAAGATCCTGGCCTCGGTCATAATGTTTGTACTCTGTTTCCTACCCTACCACGTGCAAAGGATCATCTTAATAAAATCAGGGAATAAAAACTGTCAGAAAGGGTTCAGGATAAAAACAGTCACCATCTTCATTGCAGCTCTCAGCTGTTGCCTGCATCCCATCCTCCAGCTGGTGTTTCGTTTGCGGTGCTGTCGGGCAAATCGCAACACCAGGGCCAAACCCAAACGTGAAACCTCTAAGAGCCTGGAAACACCTCAGATACATACTATACATGTGACTGAAAACATTGAAGAATCGGAGAAAAATAAAACTGAATTATGCCACGAACTGAAGAAAAATGAAACTGAATTATGCAAGCAACCAACACAGTTTTGAAGAATTTGGTTTGTAACTTTGCATTTCCTGTGTGATGCATTTGGCATAACTCTGAAACATGCTAACCTCAGGGAGCTGTGTTATCACTTTTCACAACCATTACTATTAGACAGAAAAAAAAAACAAAAAAAAAACAACTTATGATCAATTTAAATGGTACAACAATCCTTGTTGTCTACTGTGGAGCAACCTTCTCTGTATCAGTGACAACTCTTATTTAAGTAGGGCTGAAGCAATGTTAATATTCTGCTAAGTGCTTTTGCATGCATTAATTTATAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02667840_02668883.mRNA True 1723 mRNA 0.40 1 2667442 2669164

Neighbor

gene id symbol gene type direction distance location
CI01000009_02656782_02657768 NA coding upstream 9619 2656557 ~ 2657823 (+)
CI01000009_02615073_02617401 NYX coding upstream 49247 2614656 ~ 2618195 (+)
CI01000009_02601021_02609375 DDX3X, DDX3A coding upstream 58065 2601021 ~ 2609377 (+)
CI01000009_02596511_02597101 NA coding upstream 70330 2595966 ~ 2597112 (+)
CI01000009_02572388_02587828 USP9, USP9X coding upstream 79391 2572388 ~ 2588051 (+)
CI01000009_02674026_02678655 NA coding downstream 4638 2673802 ~ 2678746 (+)
CI01000009_02713403_02713914 NA coding downstream 43794 2712958 ~ 2713998 (+)
CI01000009_02799246_02827589 NA coding downstream 129867 2799031 ~ 2827640 (+)
CI01000009_02918681_02973307 KDM6A coding downstream 249517 2918681 ~ 2973952 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 452952 3122116 ~ 3138311 (+)
G51394 NA non-coding upstream 33580 2631777 ~ 2633862 (+)
G51384 NA non-coding upstream 46255 2554739 ~ 2621187 (+)
G51368 NA non-coding upstream 239120 2428122 ~ 2428322 (+)
G51354 NA non-coding upstream 242159 2415700 ~ 2425283 (+)
G51272 NA non-coding upstream 266075 2401033 ~ 2401367 (+)
G51470 NA non-coding downstream 153798 2822962 ~ 2823706 (+)
G51388 NA non-coding downstream 171246 2840410 ~ 2844319 (+)
G51495 NA non-coding downstream 232310 2901474 ~ 2901723 (+)
G51496 NA non-coding downstream 232783 2901947 ~ 2902312 (+)
G51500 NA non-coding downstream 238202 2907366 ~ 2907596 (+)
G51274 NA other upstream 316956 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 766016 1897343 ~ 1919516 (+)
G51122 NA other upstream 985476 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1229087 1429873 ~ 1435328 (+)
G50920 NA other upstream 1897209 769841 ~ 770233 (+)
G51529 NA other downstream 392869 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 533608 3202207 ~ 3208984 (+)
G53388 NA other downstream 2853078 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3191138 5931718 ~ 5943899 (+)
G53651 NA other downstream 3576400 6245564 ~ 6248392 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037275 si:dkey-216e24.9 coding NC_007120.7 CM002893.2 33423170 ~ 33427035 (+)