CI01000009_02918681_02973307 (KDM6A)


Basic Information

Item Value
gene id CI01000009_02918681_02973307
gene name KDM6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2918681 ~ 2973952 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02918681_02973307.mRNA
CTCGCGCTGCTGCTGCTGCTGCTGGTGGTGATGAGGAAAAGAAAATGGCGGCGGGAAAAGCGAGTGAAACCGAGGAGGACTTTCCGAAGCTTACGCCGCAAGAAAGGGAGCGCTTAGCCAGCATAGACAGTACACTATTTGGATTTCAGAGGCTTCATGAAGATGGCGCCAGAACGAAGGCCTTGCTGTTAAAGGCTGTTCGCTGCTATGACGTCTACATCTTAAAAGCTGAAGGGAAAGTGGAGCCAGAGGTGTTTTGCCAGTTAGGGCACTTCAACCTTTTACTGGAAGATTATTCTAAAGCATTATCTGCTTACCAGAGATACTACAGTTTACAGTCAGACTACTGGAAGAATGCTGCCTTTTTATATGGCCTTGGTTTGGTTTACTTCCATTACAATGCTTTTCAGTGGGCAGTGCAGCGCACCCCCTCAGATGCCCATTCTGGACAGAGAAGGGCGATAAAGGCATTTCAGGAGGTGCTTTACATTGACCCCAGCTTCTCAAGAGCCAAGGAGATCCATTTACGACTCGGCCTGATGTTTAAAGTCAACACAGACTATGAGTCAAGCCTCAAGCATTTTCAACTGGCATTGATTGACTCCACACCCTGCACTTTGTCCAAAGCTGAAATTCAGTTCCACATCGCTCATGTATATGAAATTCAGAAGAAATACCGCATCGCAAAGGAAGCTTACGAGAGTCTGTTACAAACAGAGAATCTCCCTGCACAGGTGAAGGCAACTACGCTCCAACAATTAGGCTGGATGCATCACACAGTCGAACAGTTGGGAGATAAAGCCAACAAGAACAGCTATGCTATTCAGTGTCTGCAGAAGTCCCTAGAAGCAGACCCCAATTCGGGACAGTCTTGGTACTTCCTGGGCAGGTGCTACTCAAGTATTGGGAAGGTCCAAGATGCATTCATATCTTACCGACAGTCTATTGATAAGTCTGAGGCCAGTGCAGACACATGGTGCTCAATTGGTGTGTTGTACCAGCAGCAGAACCAGCCGATGGATGCACTGCAGGCATATATCTGTGCAGTGCAGCTGGACCACAGCCATGCAGCCGCCTGGATGGACCTGGGCACGCTGTACGAGTCCTGCAACCAGCCGCAGGATGCCATCAAGTGCTACATCAATGCCACATGCAGCAAGTCCTGCAGTAACATCCCAGCTTTAACCGCTCGCATTAAATGCCTCCAGGCTCAGTTGTGTAATCTTCAGCAAGGTAGTTTACCAAGTAAAAGTAAAATGCTCCCTAGTATTGAGGAGGCGTGGAGCCTACCAATCCCAGCAGAGCTCACCTCCAGACAGGGAGCGCTCAACACAACACAACAGCAGACCACCTGCAAAGCTCATCAGAGCAATGAAGCCCAGTCCCAAATCCCAGGCCAGTCTCTTCCTCCTCATATGCTCTCCGACCAGACAGACGACCAGTCCAGCCCAGCCAAAAGAAAGAGGATCGCTAGTCCAGCCAGGAGTTCACCAGATTCCTGGGCAAATGATCCAGGTCATCATCAAGTCCCCAACTGGAGTTTAACCCCACAGAAACTTCAGCTTCTGGAACAGTTACGGACCAACAGGGCCAATCTAAAGCCAATGCAGCTGCAGATGCTGGAACAGTTGGAAAAGCAGCTCAGCCTAATGCAACAGAATCAACAGATGAGGCTGAATTCTATGGGTCAGATGCGACCCAATGTGTCCAACGGTCCTGTAGCCGATTCCTCACTGCCTATGAAATCTAATTCCACATCGTCCCCTCACCATCCACACATTGCTCTTTCTCGCACACCCTCTGGCCACTCACGATGCGCAGCTCAGCCAATAGCCAACGGACCTGTCCCTGCAAGCCCCACCCCATGCAGCACAGCTGGAAACCTGGGTAACACAGATGCCGTCTCTGTGGGCAATAATCATCTCCCAGGATTGAGGAGCAACGGAAACGTGCCTTACTTGCGGCAAAACGCACTACCTCATAACTGCACAACCCCCACCACCAGCAGCATGGATGATGAACCGTGGAAAAGCCAACACATCAACTCCACTCAGGGGCTTCAGAAAAGTCCAGGTTCGTATCCCGCAGGTCCTAACAGCGAGCAGCCTTTCTCTTCCGCTGGAACTTCCCAGCCTACTCCGGCAGCCGGCACTGGCGTTCCAAATCAGGTCGGATGTTCGGCCACAGCCAGTGACACGTTAGCGCAGGAGGCCAGTCACAATCACCTCCCCTCCCCTAGCTCCCCTCACTCTGCTACCTCAGGTGGACAGCAAGGCATGGTGCACACCAAAGAGAGCAAGCCTTCAGGAAACGGGCATTCCGCAGGGACGCCTAACAGCACTGCCACTGCAGAAGGACTGCCTAATCACGTCCATCAGGGCCAGGCAGACGCTGCTGGGGCGAAACCCTGCTCACCAGGTGTACTTAGTTCAGACAATCCTCAGCTCTCTGCCTTGTTGATTGGAAAAGCCAATGATAGTAATAATAGTAATGGCAGTGTGTTAGCGGCTGCCGGCACAAAGGTTAACAACGTTCACCCGAGTCTGCACCCAGGGCTTAAGGCGCAGGAAAACTCAGTGGCCTCCTCTCCGTGTTCTGCCATGTCCACGGCCACACCGTCACCCAAATCTGCAGACCATCACAGCACTCAGAACAATGTTAACAGCCTTAACAGCCCCACACTCAATGGCAAAGGTCTGGAGGACTCTCAGAGCCCCCTGAAGGTGGCATCTCCGCTGGTTTGTCGGAAACCATCGCCTCCCTCGTTCGCCCCGTGGTCCTCTGTCTCCATCTACCCCAGCTCCAGTGATGTGCTCAAAGCATGCAGAAACCTGGGGAAAAATGGTGTGTCCAATAACAGCATCTTACTAGACAAGTGTCCCCCTCCGCGGTTACCACCTCCACCCTTCCCTCCTCTGCCAAAGGACAAGCTCAATCCTCCTACCCCTAGTATTTATTTGGAGAACAAGAGGGACGCTTTCTTTCCGCCGCTACACCAGTTCTGCACAAATGCAGCCAACCCCGTTACAGTGATCCGTGGCCTGGCTGGAGCGCTCAAGCTAGACCTAGGATTGTTCTCCACCAAGACTCTGGTGGAGGCCAACCCAGAGCACCTGGTGGAGGTGAGGACTCAGTTATCTCAGCCCACTGATGAGAATTGGGATGTGACGGGCAGCAGAAAGATGTGGCGTTGTGAGAGCAGCCGGTCTCACACCACCATTGCCAGATATGCTCAGTACCAGGCCTCGTCTTTCCAGGAATCGTTGCGGGAGGAAAATGAAAAGAAAGGGCAGAAAGACCACTCAGACACAGAATCTGCTCCGTCAGAAAATGTGTTGCGCAGAAGAAGAGGTCCCTTTAAGCACATCAAATTTGGGACAAACATTGACTTGTCAGATGAGAAAAAGTGGAAGCTGCAGCTGGCTGAGTTGAGTAAGCTGCCTGCCTTCGCACGGGTGGTGTCTGCAGGGAATCTGCTCAGTCATGTGGGCCATACCATTCTCGGCATGAACACAGTCCAGCTCTATATGAAGGTCCCAGGCAGCAGGACACCAGGTCATCAAGAAAATAACAACTTCTGCTCTGTCAACATTAACATTGGCCCTGGAGATTGTGAATGGTTTGCTGTTCCTGAGCCATACTGGGGTGTCATGAATGATTTCTGCGAAAGGAATAATATTAATTACCTAATGGGCTCATGGTGGCCAAATCTAGAGGACTTGTATGAGGCCAATGTTCCAGTGTATCGCTTTATCCAGCGACCAGGTGATCTGGTCTGGCTCAATACAGGCACTGTGCATTGGGTTCAGGCTATTGGCTGGTGCAACAACATTGCTTGGAATGTAGGACCACTCACTGTGCATCAGTATAAGTTAGCTGTGGAACGCTATGAGTGGAACAAACTCCAGAGTGTCAAATCTATCGTTCCCATGATTCACCTCTCTTGGAACATGGCCAGGAACATTAAAGTGTCAGACCACAAGCTCTTTGAGATGATCAAGTACTGTTTGTTGAGGACACTAAAGCAGTGTCAGATGTTGAGGGAGGCTCTTATAGCTACTGGCAAAGAGCTAGTTTGGCATGGAAGGACCAAGGACGAACCTGCTCACTACTGTAGCATCTGTGAGGTTGAGGTCTTTGATCTGCTGTTTGTCACCAGTGAGAGCAACTCACGGAAGACGTACGTGGTGCACTGCCAGGGCTGCGCTCGGAGATGCAGCCCTAACCTTGAGAACTTTGTGGTTTTAGAGCAGTACAAAATAGAGGACCTCATGCAAGTGTATGACCACTTCACATTAGCCCCACCCCTGCCCTCCTCATCCTCATCTTGACGTTAACATTAACGGTTCTTCGGATAACACCCTGGAACGCAACACATCCCTTTCTGATATTCAGGAGACCTGACCCAGTTCCACACCACTGGTTTCTGTAGCAAACCCCACGAGGCTGCTGGTTCTAAGCTGTTTGTCTATGCAACCTTGCCAAGTATGGAGTTTCGGCCCACTGGAGTGAAGTGGGATCGTCTCCATCTTCAGGACTGTTTCAGCTTGTTCAGCACCACTTTTCTTTGAAACACAAACTACAAATAGACTAATTGCTGAGGAAAAAAATGGTTTTGTGTATATACCACAAATGTCAAAATCACTCAAAACTACTGACTCTTCCTTTTTACTGTTGCTTTAATCCTTTTTTTTTTTTTCTTTTTTCTTTTTTTTCCTTTTGTGTTCTTCTGTACTTCATGTACGGGCTGATACATGGTTTTCTTTGAATCTTATTTCCTCTTAAATACTACCGTAGCTGGGCTTTTTTGTTCAAAGTTTTCTTTAGGTAACAAAAAAGAGAAATTTGTAATGTGAATTTTATTTTATTTTTATTTTTTTTAATAGTTTTGCCTCTTTTTCTTAAGGAAAAGGTCAAGTTGGGTGGGGGGGGATAGCCAAGTCACAAAGAAAAATGGGTTGCACATAGACTAAGGA

Function

symbol description
kdm6a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; chromatin DNA binding activity; and histone demethylase activity (H3-K27 specific). Acts upstream of or within several processes, including embryonic morphogenesis; face development; and germ cell migration. Predicted to be part of MLL3/4 complex. Is expressed in several structures, including blood island; ethmoid cartilage; otic vesicle; pharyngeal arch; and pronephric duct. Used to study Kabuki syndrome. Human ortholog(s) of this gene implicated in Kabuki syndrome; acute lymphoblastic leukemia; and esophagus squamous cell carcinoma. Orthologous to several human genes including KDM6A (lysine demethylase 6A).

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K11447 UTX, KDM6A; lysine-specific demethylase 6A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02918681_02973307.mRNA True 4976 mRNA 0.49 31 2918681 2973952

Neighbor

gene id symbol gene type direction distance location
CI01000009_02799246_02827589 NA coding upstream 91041 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 204683 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 239935 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 249517 2667442 ~ 2669164 (+)
CI01000009_02656782_02657768 NA coding upstream 260858 2656557 ~ 2657823 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 148164 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 171465 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 188366 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 228255 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 237782 3211734 ~ 3222297 (+)
G51505 NA non-coding upstream 4582 2913883 ~ 2914099 (+)
G51504 NA non-coding upstream 4881 2913372 ~ 2913800 (+)
G51503 NA non-coding upstream 7750 2910576 ~ 2910931 (+)
G51502 NA non-coding upstream 8442 2909983 ~ 2910239 (+)
G51501 NA non-coding upstream 8743 2909572 ~ 2909938 (+)
G51507 NA non-coding downstream 9591 2983543 ~ 2983764 (+)
G51508 NA non-coding downstream 14956 2988908 ~ 2989239 (+)
G51510 NA non-coding downstream 23927 2997879 ~ 2998415 (+)
G51514 NA non-coding downstream 27658 3001610 ~ 3001908 (+)
G51522 NA non-coding downstream 72197 3046149 ~ 3047099 (+)
G51274 NA other upstream 568195 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1017255 1897343 ~ 1919516 (+)
G51122 NA other upstream 1236715 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1480326 1429873 ~ 1435328 (+)
G50920 NA other upstream 2148448 769841 ~ 770233 (+)
G51529 NA other downstream 88081 3062033 ~ 3062587 (+)
G53388 NA other downstream 2548290 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2886350 5931718 ~ 5943899 (+)
G53651 NA other downstream 3271612 6245564 ~ 6248392 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014707 kdm6a coding CM030128.1 CM030128.1 27717966 ~ 27762413 (-)