G51510


Basic Information

Item Value
gene id G51510
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2997879 ~ 2998415 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58686
ATTTTTTTATGTGCAGCTTGCCAATAAATTATGGCTCCAAATGCTAATCCATCTGAAAGCACTGCGAGTTTGAGTCACTTATAATGTACATTTGAAAAAGCAACACAAGTCAAACATCTTTCCAGACATGAGAAGCATTTATTAACATCTTGTCCAACAAAAGACAACATTTAATAACATGTTTTTACTCCAAACTCACTTCATAACAACAGTTGAGCATCCTTGTGTGAGATGATGTGGCTTCTTACACAGAATAAAGCAGTCGTGTGTTTATTAGTCATGTTTAATCAATCAAAGAGTTTCAATCTTCTGTTTATTCAGCTACAGCAATATGACGCATGTTATCTTCTTCTGCGGCAGGACATATTTAGAGTTTCTGCGCAAGAGTGCCTTCTGGCTTTCAGATGTAGAAGCATTTACTACTGATCACAGAGCCGTACAGCTCTGACAAGCTGTGCATAAAATAATCGCAGCCTTTGCCAAATCACGTGTGGTTTAATCACGATAAATCGTGCAGCCCTACATGATACTTATGGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107709484

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58686 True 537 lncRNA 0.38 1 2997879 2998415

Neighbor

gene id symbol gene type direction distance location
CI01000009_02918681_02973307 KDM6A coding upstream 23927 2918681 ~ 2973952 (+)
CI01000009_02799246_02827589 NA coding upstream 170239 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 283881 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 319133 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 328715 2667442 ~ 2669164 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 123701 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 147002 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 163903 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 203792 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 213319 3211734 ~ 3222297 (+)
G51508 NA non-coding upstream 8640 2988908 ~ 2989239 (+)
G51507 NA non-coding upstream 14115 2983543 ~ 2983764 (+)
G51505 NA non-coding upstream 83780 2913883 ~ 2914099 (+)
G51504 NA non-coding upstream 84079 2913372 ~ 2913800 (+)
G51503 NA non-coding upstream 86948 2910576 ~ 2910931 (+)
G51514 NA non-coding downstream 3195 3001610 ~ 3001908 (+)
G51522 NA non-coding downstream 47734 3046149 ~ 3047099 (+)
G51523 NA non-coding downstream 51377 3049792 ~ 3050108 (+)
G51525 NA non-coding downstream 52494 3050909 ~ 3051364 (+)
G51527 NA non-coding downstream 55917 3054332 ~ 3055012 (+)
G51274 NA other upstream 647393 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1096453 1897343 ~ 1919516 (+)
G51122 NA other upstream 1315913 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1559524 1429873 ~ 1435328 (+)
G50920 NA other upstream 2227646 769841 ~ 770233 (+)
G51529 NA other downstream 63618 3062033 ~ 3062587 (+)
G53388 NA other downstream 2523827 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2861887 5931718 ~ 5943899 (+)
G53651 NA other downstream 3247149 6245564 ~ 6248392 (+)

Expression


Co-expression Network