G51522


Basic Information

Item Value
gene id G51522
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3046149 ~ 3047099 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58699
GTAGCTGAAGGGTTAATGTAGTACTACTCATTTGTCCTGCATTACTTCCTACATAGTTACTTATTAATGAAGGACCATTATTCTAAATTGTTACCAATAAATTTAATGTAACTCTTGGTAATGTACTGCACTAGCATTAGTACACCAAGGTATCAAGTAAGGCATCATGATATTGAAGGTGGAGTGACTGTTGTTTTACTCTTGTTTGCATAAGGTATTGTTTGTAGCTGTTGGCATCTGGTGGGAGGACTGCACCAAAGCCACTTCCTGAAATGTTTAACGTCTGGCAAAACCAAAGTGAGAATCGTAGATAAGGAGCAAATAAACCCACCTCACCTGTTTGAGCAAGGAGACAGTCCAGGTACAAACACTGTGCAGTAGGGGTGGGCTTAGCTGTTCCCCCATCCAAATCCAGTTCCTCTTGCAAAACAGTCATTTACTCACAAAGGAATTGTGTCATGAACCATGCACAAAAAACTTGGGGGATTCTCTACCATGGTAATTCCTGAAATAGCCCACGAGGGCTCTTCAAAGGCTCACTGGACATGCAGACAGGTAATTTAGATCAAGACATTAAGGAATGTGAGTGGGAGTCACTCTTCAGCCATGCAATATTCACAAACTGACAATTATGAGCATACCTAGATAGTCGAATCTCCCATTCTGCATGCTTGGCTGCATTACATCGACTACTGCACTTGTCATAACAAGTAAGAACAGGACACCCTGCTGGAGGAACGGCTCCTAAGCTTTTAGATGAGGGTGACTCAGGTGTGGAGGAAGGCCATGAATTTACATACAATTCGTGTCAAAGGTCGTTCTGACATAACCTGCATACCTAAAACACAAATAGTTTAACATTTATTTTAAAAATTAATAAAAGAAAGAAACTACTGTTGAAAAGTTTGGGGTCGGAAAGAAGTTCCTAATGCTCACCAAGGCTCCATTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58699 True 951 lncRNA 0.41 1 3046149 3047099

Neighbor

gene id symbol gene type direction distance location
CI01000009_02918681_02973307 KDM6A coding upstream 72197 2918681 ~ 2973952 (+)
CI01000009_02799246_02827589 NA coding upstream 218509 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 332151 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 367403 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 376985 2667442 ~ 2669164 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 75017 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 98318 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 115219 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 155108 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 164635 3211734 ~ 3222297 (+)
G51514 NA non-coding upstream 44241 3001610 ~ 3001908 (+)
G51510 NA non-coding upstream 47734 2997879 ~ 2998415 (+)
G51508 NA non-coding upstream 56910 2988908 ~ 2989239 (+)
G51507 NA non-coding upstream 62385 2983543 ~ 2983764 (+)
G51505 NA non-coding upstream 132050 2913883 ~ 2914099 (+)
G51523 NA non-coding downstream 2693 3049792 ~ 3050108 (+)
G51525 NA non-coding downstream 3810 3050909 ~ 3051364 (+)
G51527 NA non-coding downstream 7233 3054332 ~ 3055012 (+)
G51531 NA non-coding downstream 17101 3064200 ~ 3064432 (+)
G51537 NA non-coding downstream 29043 3076142 ~ 3076380 (+)
G51274 NA other upstream 695663 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1144723 1897343 ~ 1919516 (+)
G51122 NA other upstream 1364183 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1607794 1429873 ~ 1435328 (+)
G50920 NA other upstream 2275916 769841 ~ 770233 (+)
G51529 NA other downstream 14934 3062033 ~ 3062587 (+)
G53388 NA other downstream 2475143 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2813203 5931718 ~ 5943899 (+)
G53651 NA other downstream 3198465 6245564 ~ 6248392 (+)

Expression


Co-expression Network