G109242


Basic Information

Item Value
gene id G109242
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6164599 ~ 6166662 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147542
CGGTCAATCTGTTTCAAGATGGCTTGGAAGTGCTGAAATGATTCGGTATCTGAGCTGTAAATTACGGACCGGAGTTGTGGCTCCGCTTCTCCGGCTGTAAGTCAAAGATCGGAGATCACAGGAGAGAGATCAATAAACACGTCTGCCAGTCATCTGGATACGATTTTCACAACATCTGCAAACATGGACGTCCAGCTGAGCCTCACAGCGAGGTTTCTACAGCCACTGAAGTTGGGCCACGGCCAGCTGAACATCAGCGGAGCCAGAGTTTCTTTAAGAGGTCATGAGAGGAACCGAGAGGAGCCGAGAGAGGGGCCGAGAGAGGGGCGAGAGGAGCCGAGAGAGGATCCGAGAGAGGAGCCGAGAGGAGCCGAGAGAGGGGCCGAGAGAGGAGCCGAGAGAGGAGCCGAGAGAGGGGCCGAGAGAGGGGCCGAGAGAGGAGCCGAGAGAGGAGCCGAGAGGAGCAGAGAGAGGGGCCGAGAGAGGAGCCGAGAGAGGAGCCGAGAGAGGAGCCGAGAGAGGAGCCGAGAGAGGAGCCGAGAGAGGGGCTAAGAAGAGCTGAAAGGAGCCGAGAGGAGCCAAGAAAATTGAAATTCAAATAAATCCAAACAAATAAGTGATTAATTGGACTTGATCTGATTTATTAGAGTTTTCTCAGCAGATCCACAGTAAGAGCTTTACTTTCTCAAAGTTTCTGTAACCGAACCCTGAAGAAAAGAATGAGAAACCCTGCAGAATCACAGCTTAATCAGAATCCTACCGTAGATGTGATGTTTAATGATGTTTAGTGTAGTTAAGATgatgatgttctgtgatgtaaATCAGTAAAAGAGTTTAACTGCAGCTTCTCTTCACTGATCACTTTAATTTAGACAGAGTTTTAAAGTGTTAAGGAGGTAAAGCTGATCTGCTGCATAATGCTACTGCTTTATTCAGATAGAAATACAAATTATCTCATAATGCATAAAAAGACTGATGTAAGGAATCGGAGGAAGAAGGTTTAACAGGTTCCAGAACTGTGTTTGGGTGGAAGGATCTTCTTCTCTGTTGAAATGTCCTTCAGCTGAACTGTTATATTTCTGGGCAGACCTTTTCCCACCAGTCCGTCtttaaactgaaacaaaatcaaaagctgtaataaacagtaataaacaagtaataaatataaatcaagtATTTCTTATAGCAGTAACTCTGACCTAATAACAGGTTATCTATAAAATAACGTTATTAATATGACTGTAACTCACCTGACTCACAAATATATCTCTGTTGGGCAATTGCGTAACATCATTAGCAGAGGAAAGTCTCATCCTGAGTCCAGCAAGATGCTCTTtagaaaaacattgtt

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0003007 heart morphogenesis biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU147542 True 1351 TUCP 0.45 4 6164599 6166662

Neighbor

gene id symbol gene type direction distance location
eif2s2 eif2s2,LOC107666094,LOC107729764,LOC107685810,LOC107554185,LOC107708139,LOC107596782 coding upstream 5677 6146052 ~ 6158922 (+)
LOC111193656 NA coding upstream 41697 6120230 ~ 6122902 (+)
LOC103030993 LOC103030993,LOC108443437,LOC107566315 coding upstream 134596 6029050 ~ 6030003 (+)
LOC103033535 NA coding upstream 210562 5939684 ~ 5954037 (+)
LOC103033212 ndufs1,LOC103033212,LOC107705604,LOC107748553,LOC107566318,LOC107555450,LOC107660088 coding upstream 224928 5922340 ~ 5939671 (+)
ergic3 ergic3,ergi3,LOC107685813 coding downstream 14804 6181466 ~ 6194641 (+)
LOC103028186 LOC108433703 coding downstream 37502 6204164 ~ 6207611 (+)
LOC103027549 NA coding downstream 160710 6327372 ~ 6332568 (+)
LOC103034740 LOC108442925 coding downstream 183739 6350401 ~ 6607304 (+)
LOC103026961 NA coding downstream 515518 6682180 ~ 6699512 (+)
G109240 NA non-coding upstream 354 6164024 ~ 6164245 (+)
G109239 NA non-coding upstream 737 6163663 ~ 6163862 (+)
G109230 NA non-coding upstream 30847 6132799 ~ 6133752 (+)
G109118 NA non-coding upstream 59592 6104165 ~ 6105007 (+)
G109109 NA non-coding upstream 103235 6060939 ~ 6061364 (+)
G109249 NA non-coding downstream 81926 6248588 ~ 6249016 (+)
G109261 NA non-coding downstream 152045 6318707 ~ 6320098 (+)
G109269 NA non-coding downstream 254585 6421247 ~ 6479365 (+)
G109278 NA non-coding downstream 428495 6595157 ~ 6598488 (+)
G109318 NA non-coding downstream 448785 6615447 ~ 6616863 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 854842 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1102480 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 1336881 4805229 ~ 4827718 (+)
G108773 march7 other upstream 1572806 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 1806832 4308092 ~ 4357767 (+)
G109248 LOC108433704 other downstream 86548 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 564482 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 778103 6944765 ~ 6985492 (+)
G109527 NA other downstream 1101209 7267871 ~ 7269592 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 1275307 7441969 ~ 7448990 (+)

Expression


Co-expression Network