LOC103043916


Basic Information

Item Value
gene id LOC103043916
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 864798 ~ 871979 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245184.3
CCTCTCTTTCAGAAGCTTGTTCAGCTCGAGCGCAGCAGCTGCAGgatcagcaccagcagcagcaccgGCAGCAGCAGTGATGCCCGCGGGCACCACCAACCGCTCGGACTGCGCGCGCTGCACCGTCCCGGGGGCCCCGGggcaccaccagcagcagccacCCCCTCCACCGCTCGCGCTTTTCCCCGTGCCCGCGCTGGTGGCCGCTACGGTGGCGTGCGCCGTGCTGTTCGTGGCTGGAGTGGCGGGAAACCTGACGACCATCGTGGTGGTGAGTCGGTACCGGGACATGCGCACCACCACCAACCTTTACCTGCGCAGCATGGCTCTCTCCGACCTCCTGGTGTTCGCGTGCATGCCGCTGGACCTGCAGCGCGTGTGGCGCTACCGGCCGTGGCCGCTGGGCGGCGCAGTCTGCAAGCTGTTCCACTTCGTGAGCGAGAGCTGCACGCACTGCACGGCGCTCAGCATCGCGGCTCTGAGCGTGCACCGCTACCTGGCCGTGCGCTTCCCCCTGCACGCCAAGGTGGCCGTGACGCGCCGCCGCGTGCGCGCCGTCATCCTCGCGCTGTGGGCCGTGAGCGCCTGCAGCGCCGCGCCCGTGCTCGCGCTGGTGGGAGTGGAGGAGGGCGGCGGGCTCGAGCTCGGACACGAAAACGACACCGGCGACGAGAGCTGGAGCGCGAACTGGACCCTGAACGGCACcgggagctggagctggagcgcGAGCGAGTGCACGGCCACGCGGCGCGCGGTGGAGTCCGGGCTGCTCTCCGCTGTGGTGTGCGTCAGCGGTGCGCTCGTGGCGCTGCCCGCGCTCTGCCTGTGCGTGCTGTACACCCTGATCGGCCGGAAGCTGAGCCGGGGACGGCGCGCGGACGCGCGGAGCTCCGCGAGGGAAAAGAGCCACAGACAGAGCGTGAAGCTactggCCGTGGTGGTGTTGGCCTTCGTGCTGTGCTGGATCCCCTTCCACGTGGTCCGGTTTCTGATCTCCACCTCGTCGGCCGCCGGTTCTCCGATCATGTCTCTGATCAGTCAGTACTGCAGCCTCATCTCCTTCGTGCTGTTTTACCTCAGCGCTGCCATCAACCCCATCCTCTACAACATCATGTCCGAGAAGTACAGGGCCGCCGTGTGCCGCCTGTTCGGGATCCAGGGGCGCCAGCGCCGGGGAGCGTCCGTCACGAGGGCTGAGAGCTGCCCGGGACTCAACGAATCCACCGTCAGCCTGTGACTCCCAGAAACACGGACACCCTCATCATCCTCATTCAGGGACAGGGGGATGGATCTGTAGTTTGGGGGCATCAAAGTAGTTGGATAGCCAAAAGTACATGGACACCTGCTTGTTCATTGTCCTTTTCTGTGAAGACATTtcttacaattattattttggttacatttaaaaatctataaaactataaaaacttgtgttttaagaagaacaagtgcgattaatcaaAGCTAATCAATAAATATGGTTGtgattaatctatttttttttatcgattGACACTATTTTTTAATGAAGTCTTAAAGTCAAGAAAAACTATTTTCAATATCCttcatttcagaagaaacaatgaatgagtgagcaggtgtcccattacttttggccATATAGTCACAACAACAGTCTAACAGTAGAGGTACTGCTGTAGCGTTCCCATGTTCCTGATCTCATTCATTCCACTTCCTGTAGAATCCACAGAAACACAGCAAGCACAAATCCCTCCCTCCGCACTTCGGATCCACTGTGAACAGGATTAATCAGTGACTGGATTCAGACGCACATCGTCTTCTACTGTCttatcagatcagatcagacttTAAAATGCTTCATATGATGATCAGAACTCTGGGCAGAGGACCTTAAAGAGATCAAAGAGGAATCATCAACCATCAGACCATCAGGCGATCAGGGAggacggaggaggaggagcgctGCAGGTCATTAACAGCCTCGAGGCTGTCTTAAAGTCTGCGGCGAGGACGTGTTGAGGACGTGGTGAAAGAAATGCGGTAGAACGAGTCAGAGAACATCTGTTGCCTTAAATAACGTAAATATCTGGAGGACAAAACGAGCACTGTAGATACAGCAGCGTCCTCTCGCTCCTGATCCAGAGAAGCGAAGGCGCTGTGCTATGTTCATGCTAACACTAACTGTGCGCCTCAAATGTGACGTGTCATCTCCTGTCTTAGCCTGCAGGTGAACATGATTTCCTGTGGTAGGACACGTCTCTGGAATTAGTCTCTGAATTAGACATTTTCTAGGGTAACCTGTGACCACATTTAGTCCTGGTCATGCATTGATGTGAAAATCAGGGTTATCTTAGCCATGTCTGACTGAACACCACAAGCTGAGTTAGAGTTGCATCGCCCCCAGTTGCAGCTTATTATATAAGAATTGGCCAACACTCCAGTTGCTAAGCATAATATGACAACCGGCCTGAGACATTTTGCAAACACTGAAGTTGATAATAAGGGAATTGGCCCAAACTACCTTTGCCTACACCCCAGTTGCCCAGGAtgatatgggaattggcctgaGCTGTATGTGCTAACACCCTGGTTGCagagtaaaatatgtaaattggCCCAAGACACTTTTGTCAAATCACTggttgttgagtataatatggaaattggccCATGCCATTTATGTCAAcactccagttgctgagtataatatgggaattaaCCCAAGATGCCTTTGGCAACTCTCTGGTTGCCTAGTATAGTATTGGAATTTGCCAGAGATGCATTTGCCAACACCCCATTATATGGCaacactccggttgctgagCATAATATGTGAATTTGCACAAGACGcttttgccaacaccccagttgctgagacTAATATGGGAATTGACTTGAGTTGcttttgccaacaccccagttgctgagtataatatgggataaTAATTTGTCCAACCTGCTCTTCCCAACAGTCCAGTTGTCCAGTAtgatatgggaattggcctgaGACATTTTTGCAAATACTGCAGATGTTTGCTTTAACATGGGAATTGACATGTGTTGCTTTTACCAACTCTCTGGTTGCAGAGTATACCAGAACAATTGGTCTGAGCTACATATGCCAACACTTCAGTTGCCGATGATATGTGAATTGGCCCAAGCCGCTTTTCCCAACACCACGGATGGCCCAAGCTGCTCCCTTCGCCAACACCCAAGTTGCCCAGTATGATATGGCACTTGAAATGAGCTGCATATACTAATATGGGAATTGACCCGAGATGGTTAAGCCAACACCCAGGTAATTTTCCTGAGGCAGATTTGCCAATACTCCGATTGCTGAGTATATTATGTGAATTGTCTCAAGCAACTTTTGCCTACACCCTGGTTGCAGAGTATCATATCTGAATTGGCCCAAGATGCTTTTGCCAACACACCGGTTGCAGAGtctaatatgggaattggcccaagatGCTTTTGC

Function

GO:

id name namespace
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245184.3 True 3460 mRNA 0.52 2 864798 871979

Neighbor

gene id symbol gene type direction distance location
LOC103025162 NA coding downstream 150817 708344 ~ 713981 (-)
pxylp1 pxylp1 coding downstream 339291 504270 ~ 525507 (-)
LOC103031067 NA coding downstream 400964 448578 ~ 463834 (-)
LOC111195070 LOC108442280 coding downstream 561050 295258 ~ 303748 (-)
LOC103029691 LOC108443634 coding downstream 673414 185208 ~ 191384 (-)
LOC103021504 LOC103021504,LOC108442331 coding upstream 266266 1138245 ~ 1146382 (-)
LOC111192362 NA coding upstream 621187 1493166 ~ 1496427 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding upstream 835760 1707739 ~ 1717654 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding upstream 847833 1719812 ~ 1729386 (-)
best4 best4,LOC106569841,LOC108262062 coding upstream 892285 1764264 ~ 1772891 (-)
G303 NA non-coding downstream 9309 855070 ~ 855489 (-)
G301 LOC108442328 non-coding downstream 12854 845542 ~ 851944 (-)
G178 LOC108440468,LOC108278266 non-coding downstream 286247 556165 ~ 578551 (-)
G170 NA non-coding downstream 402443 445455 ~ 462355 (-)
G151 NA non-coding downstream 499751 343925 ~ 365047 (-)
G315 NA non-coding upstream 32633 904612 ~ 905544 (-)
G328 NA non-coding upstream 77854 949833 ~ 950520 (-)
LOC111191897 NA non-coding upstream 102472 974451 ~ 1008505 (-)
G339 NA non-coding upstream 110207 982186 ~ 1030058 (-)
G331 NA non-coding upstream 129582 1001561 ~ 1002279 (-)
LOC111197534 NA other downstream 8638 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 194083 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 992536 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 1048501 1920480 ~ 1928255 (-)
znf414 NA other upstream 1551734 2423713 ~ 2434401 (-)
G807 NA other upstream 1678237 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 2038775 2910754 ~ 2970340 (-)

Expression


Co-expression Network