G130174


Basic Information

Item Value
gene id G130174
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 7710065 ~ 7710362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176049
catgcagctttgccatcagctgccggcgctcagagggagcaaaattggctctgctccctccgggtgggtagatggcgctctctccccatcacacttaaggtggcgccgggcggcacgaggcgtctgtgagcggatgaatcggaacctagccgctgtgctttcctccgagcgcactagctgctcaggcaatgattaatctgcagcagcttgaaaaaaggggtgattgacttcacacgtgtcggaggaggtgtgtgctcgtccgcatcctccaagaGTCGCAGGTGCCACcagtgatggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176049 True 298 lncRNA 0.59 1 7710065 7710362

Neighbor

gene id symbol gene type direction distance location
pex14 pex14,LOC107681981,LOC107708844,LOC107586529,LOC107716227,LOC107695784 coding upstream 668031 6924949 ~ 7042034 (+)
masp2 masp2 coding upstream 815702 6850087 ~ 6894363 (+)
cort cort,sst3,LOC107708791,LOC107571809,LOC107695747 coding upstream 882336 6825920 ~ 6827729 (+)
srm srm coding upstream 893034 6810624 ~ 6817031 (+)
smc1a smc1a,LOC107586531,LOC107716226,LOC107695786 coding upstream 900697 6787909 ~ 6809368 (+)
aurkaip1 aurkaip1 coding downstream 208647 7919009 ~ 7922636 (+)
LOC103036256 mxra8 coding downstream 213501 7923863 ~ 7946663 (+)
LOC103035729 dvl1,dvl1a,LOC107708824,LOC107570850 coding downstream 239475 7949837 ~ 8019122 (+)
LOC103036568 NA coding downstream 321171 8031533 ~ 8038450 (+)
LOC107197257 NA coding downstream 794111 8504473 ~ 8514270 (+)
G130169 NA non-coding upstream 31239 7678466 ~ 7678826 (+)
G130151 clstn1 non-coding upstream 88828 7619566 ~ 7621237 (+)
G130145 NA non-coding upstream 98818 7610818 ~ 7611247 (+)
G130140 NA non-coding upstream 122758 7587108 ~ 7587307 (+)
G130128 ube4b non-coding upstream 161571 7544430 ~ 7548494 (+)
G130175 NA non-coding downstream 645 7711007 ~ 7711370 (+)
G130179 NA non-coding downstream 7469 7717831 ~ 7718055 (+)
G130183 NA non-coding downstream 19014 7729376 ~ 7729647 (+)
G130185 NA non-coding downstream 25481 7735843 ~ 7738103 (+)
LOC111194064 NA non-coding downstream 32582 7742944 ~ 7792144 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 101182 7601605 ~ 7608883 (+)
G130120 LOC107716234,LOC107681965 other upstream 220824 7478355 ~ 7489241 (+)
G130119 NA other upstream 237107 7468385 ~ 7472958 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other upstream 294987 7408996 ~ 7415078 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other upstream 2108604 5599278 ~ 5601461 (+)
LOC103037383 LOC103037383,LOC108432529 other downstream 381369 8091731 ~ 8094054 (+)
G130413 NA other downstream 853288 8563650 ~ 8564575 (+)
cda LOC108416503,LOC108433378 other downstream 952381 8662743 ~ 8665819 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other downstream 1143327 8853689 ~ 8870829 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other downstream 1406808 9117170 ~ 9119782 (+)

Expression


Co-expression Network