CI01000012_12427476_12429642 (DUSP13A)


Basic Information

Item Value
gene id CI01000012_12427476_12429642
gene name DUSP13A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12427261 ~ 12429852 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12427476_12429642.mRNA
AGAGCTGAAGTGGAGTGTCAGTGCGCTCTTAGCAACAAGAAGATTTCACGAGCAACGGCCTCAGGTGGGCTCAACTAGTTTGATGGGCTATTTGAAATAAAGAGGGATGGAGAATGCATCTAAACTGCATATCAGGCATATTAGCATGATAACATCCGATCACTGACTGTAATTTTTAAATAAAAATATCTATTTTTTGGGGGGGCCAGGATGTCTCTCAAGGAGCTGTGTGCCTATGAAACACCATCCGCTGCTGAACTGCAGAACTTCCTGCTGGCTGACAGACGGCCCACTGGACATGTCAACCAAGTGTGGCCTAATGTGTACATTGGCAATGAGTGTGTATTATTTTTCCTATTCAAATGGAAATTCAAAGAAAACATACAGAACTACAGATGTTCTCTGTGTTTATGTTTTGTCAGGGTTGCGGCAAGAGACAAGTCAATGCTGTACAATATGGGGATCACACACATTGTGAATGCTGCTAGTGGACCCCCTCATGTCAACACTGGAGCCCGCTTTTACAGAGACATGTCTATAGATTACTATGGAGTGGAGGCTGATGATTCCTCAGACTTCATCTTAAGTGTGTTTTTCTATCCAACAGCAAGGTTCATACGAGCTGCACTATCAAAAAAAGGAAGAGTGTTTGTCCACTGTCTGATGGGAGTGAGTCGCTCTGCCACTCTAGTGTTGGCCTTCCTCATGATCTGTGAGGATCTTACTCTAATGGAGGCTGTTAAAGCTGTACGGCAACACAGGGACATCTGTCCTAACCCTGGCTTTCTTAACCAGCTTCGACATCTTGACATGAGCCTCGTCCGAGAGAGGAAGAAAAAACTGGAAGCTTACAAATTGTAACTGAAAACTTGGTAACAATGTGATGAATCCCATTTCAAGAGCATGTTCCTTAAGGGCCTCCTCCCCCATAGCCTTGTCCCAGTTCTGTTGGGCCAGATCTTATTTGCTAATATCCATTGTAGTGCAATGGCAAAGTGGGTATCAGAAGGCAAAATTGAATGGCTTCCCCATAAATAGTAAATAACCCCCAAAGGGCAGCAGGGTCACAAAATAAA

Function

symbol description
dusp13a Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human DUSP13 (dual specificity phosphatase 13).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12427476_12429642.mRNA True 1076 mRNA 0.44 2 12427261 12429852

Neighbor

gene id symbol gene type direction distance location
CI01000012_12423294_12424616 NA coding downstream 2327 12423190 ~ 12424934 (-)
CI01000012_12269600_12269899 NA coding downstream 157267 12269358 ~ 12269994 (-)
CI01000012_12255640_12268649 NA coding downstream 158465 12255478 ~ 12268796 (-)
CI01000012_12215687_12218599 AP3M1 coding downstream 208571 12215022 ~ 12218690 (-)
CI01000012_12142558_12152757 CHUK coding downstream 274504 12142503 ~ 12152757 (-)
CI01000012_12434858_12435727 NA coding upstream 4046 12433898 ~ 12436235 (-)
CI01000012_12437305_12438138 NA coding upstream 7300 12437152 ~ 12438622 (-)
CI01000012_12467799_12485431 COL17A1B coding upstream 37377 12467229 ~ 12487091 (-)
CI01000012_12490611_12503873 CFAP43 coding upstream 60666 12490518 ~ 12503873 (-)
CI01000012_12521676_12524692 NA coding upstream 91824 12521676 ~ 12524692 (-)
G77014 NA non-coding downstream 362286 12064562 ~ 12064975 (-)
G76966 NA non-coding downstream 480732 11945062 ~ 11946529 (-)
G76956 NA non-coding downstream 522526 11904512 ~ 11904735 (-)
G76914 NA non-coding downstream 526880 11897330 ~ 11900381 (-)
G76951 NA non-coding downstream 541584 11885447 ~ 11885677 (-)
G76994 NA non-coding upstream 222514 12652366 ~ 12665651 (-)
G77128 NA non-coding upstream 275487 12705339 ~ 12705552 (-)
G77134 NA non-coding upstream 289094 12718946 ~ 12719187 (-)
G77149 NA non-coding upstream 350908 12780760 ~ 12781057 (-)
G76982 NA non-coding upstream 468503 12898355 ~ 12899359 (-)
CI01000012_12079581_12084139 NA other downstream 343001 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 375054 12046728 ~ 12052541 (-)
G75608 NA other downstream 1806390 10611915 ~ 10620871 (-)
G74982 NA other downstream 2851289 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 3025293 9398076 ~ 9402378 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 524594 12954446 ~ 12957833 (-)
G77287 NA other upstream 1189424 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005987 dusp13a coding NC_007124.7 CM002897.2 24842857 ~ 24850812 (+)