CI01000012_12526785_12534198 (ADAM8)


Basic Information

Item Value
gene id CI01000012_12526785_12534198
gene name ADAM8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12526785 ~ 12534198 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12526785_12534198.mRNA
AAAATCTTGAGGCAGCGAATCCAGCTTTGCCTCATGTGATGCGCTATGATGTGGTCCGACTCCGACCTCAGGCACTGAAAGAGCGAGCGAGAAGGAGCGCCTCTTCTCTCAAGAGATATCCTGAACAACTTGAATATGATTTGGCTGTAGATGGGAGGAACTTAACAATATCTTTGCACAGAAATAAGGAGCTTTTAGGAAAACATTACACCTTGTCACATTATACCAAAGATGGAATTTCAGAGACCAAGTCTTCAGACAATATTGATCACTGCTACTATCACGGACACATCCAGGATTTTGAAAACTCTTCAGTCAGTGTTGGACTTTGCTCTGGAATGGAAGGGTTTCTGAGGGTGAACAATCAAGTTTACTTGATTGAGCCCCTAGAAGAGTCTTTGGATGGGGACCATGCTGTTTACAAGCAAGAGCATTTAAGGACCAAGCAAGGGACCTTTGGATACATTAATGACACAGTCTATGACCTTGGCCCAAAGTCTAGCGGACTGTATAAAGGCAAAATTATGAAAAACAAAGCCCCCAGAGGAGGACAGCGGATCGTTGAGATGGTTTTGGTCGTTGATCATACGGAGCTTTACCGACCTTTAAACATACGTGTCATGTTGGTTGGACTTGAAGTTTGGTCTCAAAGAGACATGATTGATGTCAGCAATGTACCAAATCTTACTCTGGAACGATTTTTACAATGGCGTCAGGATAGCCTGCTCAAAAGAAAGAAGCATGACAATGCCCATTTTATTACTGCTGTAGATTTTGTTGGAACAACGGTTGGGTTGGCTACAATGAATGCTATGTGCTCTCCATCTTCCGGTGCTGTGAATCAGGACCATAATAACAATCCCATTGCAGTGGCTTCTACCGTTGCACATGAAATGGGTCATAATCTGGGTATGTCACATGATGATTCAAACTGTGGATGCTCCTCTTACACGGGCTGCATTATGGGAGATACAATTGGGCATATTTACCCTGATTCCTTCAGTGCTTGCAGTCAGTCGAACTTGAAGGCATTTTTGCAGAACTTTGACAGTAGCTGTCTACTAGACATTCCAGATGAGGGTGAACTATATGGAGGCCCAGTTTGTGGAAATGCTTTTGTTGAAAAAGGCGAAGAATGTGACTGCGGAACTGTTGAGCTGAAACATTTAGGTAGCCTGTGCAGACAGAGTGCTCACGACTGTGATTTGGACGAGTACTGTACAGGAAAGTCAGCCTTCTGTCCTGAAGATGAGTATAAGATGAATGGACTCCCCTGCAATCATAATCAGGGCTACTGTTACAATGGACAATGTCCAACACATAAGGAACACTGCAAGATGCTGTGGGGATCAGCGAGACATGCTGTGATAATTGGTGTGTCCGCATCTGTAGTCATCCTTGGACTGATCATTATTATTGGAGCACTGGTGTGTCACAGGAACAAAATAATAGAATTTAGAAAGAAAAGGTCTTTGAAGGACATCCACAAATCCTCAGGCCAGTGCAATCCGGCATTCCAACCGGGAAGTGCAAAGAACAGCCCCAGATGCGCACAGCCACGCGTCAGTCAGCCAACTTTCCTTGAGTCATCCACTAGTCTGACCTGCAAACCTCTCTACTCTCCGGCTACACCCTGTAGACCAGCACCATTGGCTCCAAAGAATGCACCACAAACTAGGAATGAACAGATGGTGAAACCATCCGTCCCACCTCCTGGCATTTCCAGAAACATTCATCCTGCTCAGGAAAAACCTCTGCTGCCACCATCTAAACCACTTCCTCCATCAAGACCATTACCGCCACTGGTATCTAAACCT

Function

symbol description
adam8 Enables cell adhesion molecule binding activity and metallopeptidase activity. Involved in several processes, including cellular response to hypoxia; positive regulation of membrane protein ectodomain proteolysis; and positive regulation of neutrophil extravasation. Located in several cellular components, including cell surface; cytoplasmic vesicle; and podosome. Is integral component of plasma membrane. Biomarker of asthma; pancreatic ductal carcinoma; and pulmonary eosinophilia.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12526785_12534198.mRNA True 1817 mRNA 0.45 16 12526785 12534198

Neighbor

gene id symbol gene type direction distance location
CI01000012_12521676_12524692 NA coding downstream 2093 12521676 ~ 12524692 (-)
CI01000012_12490611_12503873 CFAP43 coding downstream 22912 12490518 ~ 12503873 (-)
CI01000012_12467799_12485431 COL17A1B coding downstream 39694 12467229 ~ 12487091 (-)
CI01000012_12437305_12438138 NA coding downstream 88163 12437152 ~ 12438622 (-)
CI01000012_12434858_12435727 NA coding downstream 90550 12433898 ~ 12436235 (-)
CI01000012_12540676_12541954 MSX3 coding upstream 6034 12540232 ~ 12542559 (-)
CI01000012_12587953_12589094 FUOM coding upstream 53495 12587693 ~ 12589364 (-)
CI01000012_12592469_12594321 ECHS1 coding upstream 57760 12591958 ~ 12595201 (-)
CI01000012_12598963_12604426 LGALSL coding upstream 63406 12597604 ~ 12605372 (-)
CI01000012_12613737_12614861 SERTAD2 coding upstream 77361 12611559 ~ 12616211 (-)
G77014 NA non-coding downstream 461810 12064562 ~ 12064975 (-)
G76966 NA non-coding downstream 580256 11945062 ~ 11946529 (-)
G76956 NA non-coding downstream 622050 11904512 ~ 11904735 (-)
G76914 NA non-coding downstream 626404 11897330 ~ 11900381 (-)
G76951 NA non-coding downstream 641108 11885447 ~ 11885677 (-)
G76994 NA non-coding upstream 118168 12652366 ~ 12665651 (-)
G77128 NA non-coding upstream 171141 12705339 ~ 12705552 (-)
G77134 NA non-coding upstream 184748 12718946 ~ 12719187 (-)
G77149 NA non-coding upstream 246562 12780760 ~ 12781057 (-)
G76982 NA non-coding upstream 364157 12898355 ~ 12899359 (-)
CI01000012_12079581_12084139 NA other downstream 442525 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 474578 12046728 ~ 12052541 (-)
G75608 NA other downstream 1905914 10611915 ~ 10620871 (-)
G74982 NA other downstream 2950813 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 3124817 9398076 ~ 9402378 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 420248 12954446 ~ 12957833 (-)
G77287 NA other upstream 1085078 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location