G188946


Basic Information

Item Value
gene id G188946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11179178 ~ 11184931 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256093
tttggacaatgaaactgaaacacctgccgtgatttgatcagccgtggttttatgttttttggatacaattcgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgcgccagcaagacgtgcaccaacaacttctcctcttttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256093 True 269 lncRNA 0.47 2 11179178 11184931

Neighbor

gene id symbol gene type direction distance location
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 23433 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 319280 10834016 ~ 10859898 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 895264 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 1076285 10094323 ~ 10102893 (-)
aadacl4 NA coding downstream 1157501 9999315 ~ 10021677 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 187326 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 872601 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 997188 12182119 ~ 12207582 (-)
hmces hmces coding upstream 1045485 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 1051955 12236886 ~ 12244320 (-)
G188944 NA non-coding downstream 7289 11171647 ~ 11171889 (-)
G188939 NA non-coding downstream 22867 11155900 ~ 11156311 (-)
G188929 NA non-coding downstream 100607 11078457 ~ 11078571 (-)
G188930 NA non-coding downstream 100977 11077250 ~ 11078201 (-)
G188936 NA non-coding downstream 102290 11076578 ~ 11076888 (-)
G188972 NA non-coding upstream 74330 11259261 ~ 11259462 (-)
G188973 kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395 non-coding upstream 76208 11261139 ~ 11262251 (-)
G188974 kbtbd8,LOC106583033 non-coding upstream 78594 11263525 ~ 11263988 (-)
G188975 NA non-coding upstream 79108 11264039 ~ 11264590 (-)
G188976 NA non-coding upstream 79831 11264762 ~ 11266678 (-)
G188898 NA other downstream 187784 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 1222861 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 3759372 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 3788152 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 3985926 7188616 ~ 7193252 (-)
G189055 NA other upstream 858982 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 975611 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 1113118 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 1427680 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 1429981 12614912 ~ 12619566 (-)

Expression


Co-expression Network