G188973 (kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395)


Basic Information

Item Value
gene id G188973
gene name kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11261139 ~ 11262251 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256137
CCTTGGAGCACATAGATGCGATCCTTATACTCTATGGCACTGTGGAACTCCATGGCAACAGGCATGGGGCTGACGGCGGTCCAGCAGTTGTCCCTGGCGTCGTAGCACTCGACTGATTTTAATGCGTTACGGCCGTCCCCTTCGTACACACGGCCACCGAGAGCGAAGAGTTTGCCACAGCAGTGCACCAGTCTACAGCCGATCCTCGCCCGCAGCATGGGCGAGCGAGGTAACCAGCGATTCCCAGCATGTTCGTACTGCCAGAAGTCACTTTCCGCCCGGTGATCGATCGACACCTCGCTGTTGCTGGGACGGTAGCCCCCAGCGATGAATATGTCGTTCTCGGACGTGACGACTATGCCGACCTCGCGGAGGTCGTTGGGTGGCTTGCACAGTTTATAGACTTTCCCTGTGGCGGTGTCTAGGCAAGGCACCGTCTGCTTCTTCCCTGAGTGTTTGTGTGCCGCGTCAAAGCAGATGACCATCTCGGACGCGGTCATGCCCAGGCGCTGAGGGCAGCCACTGGTGCCGTTCAGTCGCCCCTTGTCGGAAGGCTCTTTGGACAGGGCCAGGGCGAAGGCGGGAGGGATGCGGCTCAGGAAGGCCTCGTCCAGCAGCGGCAGACGGATGCACTCTGCGAAGACCTCGGGCAGGTCAGCCTCGCGACGTGGTCGGTCGTGCTCCAGCCAGCAGACGATGCTTTCGTACACGTGCTCCTCCTTCTCCACGTTGAGGTCGTCGTTGTTGAGGATGCTAACCAGCTGCTCCTTGGTCAGCTGCAGGAACTCCTGCTCGCCCATTACGCACAGGAACTTCTTGCGGATGTAGTCCTGCGAGCGCTCCCGCAGCTCCTGGTGCCCGTAAGCGTCAGCAAACATGAACACCCCTATACAGTTCTGGGGGTCCAGCCGACTGATCATGAAGTAGGCGCACTGGTCCTGCAGCGCTGGGATCTGGAAGATGCTGGCCGCTGTAAACAGGGCCTGAACGTTGCATTCAGACAGTGTGACTCGTGAGGTGTAGGCATAGTCCAGGACCAGGCGCATGGACTCGGACTCGACGCCAACGATCCGCACCTCACGCTGGCTGCTTTCTGTAAGGCCACTGGTGAAC

Function

symbol description
kbtbd8 Predicted to be involved in neural crest cell development; neural crest formation; and protein monoubiquitination. Predicted to act upstream of or within regulation of translation. Predicted to be located in Golgi apparatus and spindle. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including adaxial cell; diencephalon; neural plate; primordial germ cell; and tail bud. Orthologous to human KBTBD8 (kelch repeat and BTB domain containing 8).

NR:

description
PREDICTED: kelch repeat and BTB domain-containing protein 8 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256137 True 1113 lncRNA 0.60 1 11261139 11262251

Neighbor

gene id symbol gene type direction distance location
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 105394 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 401241 10834016 ~ 10859898 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 977225 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 1158246 10094323 ~ 10102893 (-)
aadacl4 NA coding downstream 1239462 9999315 ~ 10021677 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 110006 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 795281 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 919868 12182119 ~ 12207582 (-)
hmces hmces coding upstream 968165 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 974635 12236886 ~ 12244320 (-)
G188972 NA non-coding downstream 1677 11259261 ~ 11259462 (-)
G188946 NA non-coding downstream 76208 11179178 ~ 11184931 (-)
G188944 NA non-coding downstream 89250 11171647 ~ 11171889 (-)
G188939 NA non-coding downstream 104828 11155900 ~ 11156311 (-)
G188929 NA non-coding downstream 182568 11078457 ~ 11078571 (-)
G188974 kbtbd8,LOC106583033 non-coding upstream 1274 11263525 ~ 11263988 (-)
G188975 NA non-coding upstream 1788 11264039 ~ 11264590 (-)
G188976 NA non-coding upstream 2511 11264762 ~ 11266678 (-)
G188985 NA non-coding upstream 40498 11302749 ~ 11305453 (-)
G188994 NA non-coding upstream 197837 11460088 ~ 11460377 (-)
G188898 NA other downstream 269745 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 1304822 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 3841333 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 3870113 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 4067887 7188616 ~ 7193252 (-)
G189055 NA other upstream 781662 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 898291 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 1035798 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 1350360 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 1352661 12614912 ~ 12619566 (-)

Expression


Co-expression Network