G104757


Basic Information

Item Value
gene id G104757
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5199322 ~ 5208279 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU119097
TAACACATTTTGTACAAGTACATTACAGATACATGACATAAGTTATTAGTCTTGTTAGATGTATATTGTATAAAACAATATGATACTGCAAGCTGTTCTCATGGCAGAGTTCACAGGAATTGGTTTGGTTTGTTCTTTTTCAGCCTCTTCCTTTTAACACTTGTCTGGGCAGGAGAGTTGCAGATTTGGTTGACAGAATTACATGCATTTCTTTCACTTTTATGTCTGTTTGGCTGGGAATTTGAGCTGGTGGAATTTATATGTCCCTCAGAGAGGCAGTGGAGGATATTCATCATCATTCATCTGTATATGAAAGCTTCCCTTGCACAATATTTAAGTATTTGTGTAATATAGTAACAGCGATGTTGTCTCATTCTCAAATCTAGTCATTCTGCATCCCCTGCTGATCAACTTACAAGTGAATCCTTGTTGTACAAACAAATGGCAGAGATAAGTGCTTTTGAAGACAAACTCACCTGATGGAAGAACCATGCTAAGACTTGTACATTTAGCCAGACACTACCTGTGCATTCCAGCATCAATTTGTTTGTTGTGCGTTAAGCACATCTTTATCTGTAGTCCTTGATGCATTAGACTGAGGAGCACAATGATACTCTTGTTTACTTTGCCAAGAACCTGAAAAAGTCCAAAGAGAGATCCAAGAGAGAATATGACAGAAAAACAGGGGGGAACATGTTCAGGTTCAATGCGGCGCCAGGCTCGCGCGAAACAAGTCTTTTTTGCTAGTTTCAGTCCGACGCAGTTAACATTTTCATGTCCTGCACCACGTTGTTTAAATAGCAAATGCATTTGTGCCTGTTTGTGTGCCCGTGGACGTGCTGGTGTGAAAACAAGGTGTGTTCAGGAGCATTGTTGGCGCGTTGCTATTTTGAGGCAACTCAAATAGACTGTGCCACTGACCAACTGAAACCTGGTCTAAAGTCAATGGCGCAATATTTTTTTTTATTTTTTTTTATTTAAAGAGCGCCTTTATTAGTAATAAGCGCCTATAGGCGGGTGCACAACATGCGTACACTCTGCTTATTACACACACACAGGGATGCGCAGCAGCACACAAACATGCCATATATTTAAAATATGGGTTATTTTTTTTTATTTTATCAGTTTTTATCCGTTTAAACAGTTCACATTCCCACTCAGTCTCAGCAGACAGCAAAAACTGAGCTTTCTGTTTATTAATAAAAACAACAACAACAAAACATTCTGTCATCTATTATTTGTTTACTTTTCCTGCTGTTTTAGGTTTTTGCTGTAGTATCATTTAAGTACAACACTAGAATGAGACAATTATGTAAATATGTATAATTTTGTGTAATGATGTAAAATAGAGTGACGGAACATATATGCTTCAGAAAAGATTAATGACTACACCCTAAATAGGCGCACTGAGTTGTAAACCACAAGATACAGTTAAAACATAGAGCTGCCAGATAGATTATGTGTGCGAAAGGAATGGGGTATGTATGAATCACAGTTCATGAAGGGTGTGGAGACATTCCCTTCTTGACTTGAACAGTTTAAGTAGAGTACGATTTCAATGTATCAAAGAAGAGTGACAATCGGAGAACGCTTGATGTTCATGCTCCATTGTAAATGTTTCAAGTCACCATTAGAAGACAGAAGTGTCTTCCATTTCAATGTTTATACAACTTGTTTTGGTATATAGATGTATTTAAATTGATACAACAATATGTAATCTGGATAACGTAATCAGATTCCAAAACTTATACACTTAGATTACATTTTTTACTTTTTAAAATTTACTTTCTAAAACAGCCTATTGCCTTGCAATGAACAGAATAATCCATATCAGGGAACAACAAGAACTAAAACAAATGTCCAAGATACATCCGAGGAGGACAACACCAGACAAAGAACATGAGAAACACGGGTATATTTACACAAGGGGTGACTGGTAAACAAGAAACACCTGGGAACAATCAGAGAACTAATAAACAAGAAAAAGTACAAAGGACTACAAAATATGGCACTGGGACAGGAAAACAAAAGTCCACAAGACAGGCATCAAGCTTGTACACACTAGTCACAGACACCTTAAATTTCTCCAAGCTGTTTGCTCACTAAAAACCCACACAGTCATCATGTTTTCAGGCCATTTCAAGATTTGATTTTGATATGACAAAGCGGTGTTATCTAAGTGGCTGAGTTACTTAAATTTTAAATTAGTCTTCCCATAAACGCCATCGTCTTCATTTAAAGCGCACAAAATCAAGAGGCGGGATTTATCGCACCAATCATAACTAATCACACCCAATCATAGTGCGAGGGAGACATTGCCTCTTCTCATGTCACTTTCCCCCATTCATTCTCAGTTATCCCCCATCAAACTTACCGCACACTTTAGGGGGTCTGTTTAAAGTCATCACGCTCATGTAACCCCTCTACCCAGGTCCTACTCGCCCCGCTCTGGGTGGGCCTCGAACCTGGGTCTCCGGCGTGGGAGGTGGACGCTCTAACAAGGAGGCTAAAGGCTGCAACCTCTAGTGTCAGTCGCTAGAGCATTTCTTGAGATCGGAGGAGTGAGGTTTATTAGCACAGCAACTGCTAGCTGGCCTCCGTTACACTCACCCCCCTAAACCTCACTCCCATCCGGGTCACGGCACCCTCACCCAGGTCCTACTCGCTCTGCGCGGGCCTCAAACCTGGGTCTCTGGCGTGGGAGTCAGACGCTCTAACGAGGAGACTAAATGCTGCAACCTCATAAAATTCTCCAAAGCTGTTTGCCAAGCTTTTGATTAAATTTTTATATTTGAAATCACCAATGAAATCTGACAACAACTGTCTCATAAATTTTGTTTCTAATCATTGTTTCTAATTATAAATTTCGAATCATGACAAAAAACGGTATCTTTCAGGCTGGATCAAGCTAATGCGTATGCGCAGTCCTAAGTGCACCATGTGTGTGTTTGTCTCGCCGCAGCGTCCGAGGTGCAGACGCCGGGAACGGCATCCAAGTGTTCATTCCCGACATCGGCATGTTTGTCGTAGGCCTGGTCACATGGCTTCTGTGCCGCAGTCTGGAGAAGCCGCCGCTGAAGGACGTGTCGCAGCACAACAGTGACTTTGAGGTGGACGACCAGGTGAGAAACACACACTATTACACACTCACAGAAATACACTTTGTGTTCTTCAGTCTCTGTAGGAAGCACGCATCTGACTGTTTCTATAGGAACCGGAGCTTCTAACGGCCGCTGCTCTGATGCGATGACGATGCGATGACCAATTGCCGTTTGGCTCTTATTTAGAAGGCGGGACTTATGCTGTGTTCCAGACAAGGTTGGACGTGGGAATATCCCAAATTAAATGTCCCACTTCAGACCTCAGTGCGTTCCAGTCATAATACTTCACATTCACATGTTCACCACATGATGTGGCCATGACACCATGAGAGCATATCGTGGTTTTTTTTGTCAATTATGGCAAAACAGAATAAAATAACATAAAATCGCTTTGAAAACAGCTTACGAAAGCAAAAAACGAAAGTATTGCATTGGAAGCAAGACACGGCGACATCTTGGAAGATGTCTCACTGAGATCGGGGTTGATCGATGTACCCTGAGTTCACACGCCGAATGTCCGACTTTGAGTGCCGTTCACTAGAAGGAGGTGGGAAAAATCCAGAGTCCGATCTGTCTGGAACGCAGCATTATTCCGCCAAATTGGCGTTGCACTTTCTCCCATTCAAAACAATACGAGTGACGCGTCTTGTGTTATTCTAGTCTTTGGTTCTATTCTAAAACTCATAGCACAAAGGAGCTCATAAAATGCAGCTTCCAAACGTGTAGTGTCATTTGCAACCTACCTAAGTCAACCACATTCTGAAGGGATCAGGAAGAGATTACACAAGATAAATAAATGTGCACAGCACACCTGCATAATCCAGTGATATAAAAACCTTCAAAAATGCGACCAAACAACTAAAGGGATCGCTGACTGCAGGGTATGCTGTAGTATGTCTCCAAAGAGGAAGAAGACACTAGAAAGTTATGAGAAACTCTTTTAGGAACCCTTCCACACAGTATCAAATCAACATTGAAAACCCAAAAATGTGTTAATGAGTAACGGCGACATCTCGACACTAGTCAGTGAAACCAATAGGCCAATAAAGTAATACACTATACAGTAAAGTAATATAAGGTAAGCCCAAGTATGCTAGAGTCATGTGGTATTTACATATTACACTTAAGGCTTGCATGTCTTTCAGAGACAATTATGTGAATTTCTTTTCGGGAGCGTTGATGCCAAAACAACCGTATGACTTAGCCCTCAGGTACTTCAGGAAGTGCCAAACCTTGCATAGCAAGGTGGAATTTGTAAACAGGATAAATCTCTACAGCTTCGTTTCAACACTTTCTTTCCGGTCCTCCTTGCTGTTTTGTTTGATTTAGAAATGCCATGTTACAGATGAAAAATTGTATTGTTTCAAGGCCAAATGTTGAATCATTCGTTTATGCACTGCAGAAACTCACACAAACTTTCCTTTTTGTACTTTTTGTACTAGATACAGATGCTAAAGTACATTGAAGGAATTTGCAGCCATTCAAAACTGAGTGGATGGGTACACAGTCTTTCTTACGTCCTGTCACCATTAGGCTCTTGTCTGGCTTCACTGCACTCATGCAAAAAGTATTCTGCAAACCATTGGGCCAAACAGGATTAATATAAGTTCAAGTTTAATTACACTAGTTTGAAGTTTATTATACATGGGGCTCCCTGTTGGCACTTTTGCTAACCATGTTATTGACTAAATTTGCCTAAATAACAGTCCAGTCCTAAATTTGCACATTTATGTAACGTATTTGGTTTGGTTGCCAAGTACCAAATGAAAAAATCCTCTGTGCTTATGTAACTTAACTAAATATTACATTAAAAAACTTGGTACCTCAAATGTATTTACTTTTTTTTTTTTTTTTCCTTCCATTTTCAGCTTTTAAAATTAAAGCTGTTTTGCATGAACAAATGGCTAGTTCACATAAATTACTTTTGGAAAGTGTCCTGTGATGTGGCATTTTATATGCCATCTTTTATTGTTATTGCTCGTAAAGCTTTTGTAACCTCATATTAATTGAGAAACTTCATGGAGTTTTTGTACTTTTAAAAAATTGTATTTGTTAGACTGCTCTGTCTAACTTCTGACCAAAAGCACATTCAACATGCTTCCCAACAGTGAAATGGAAACAGCCTTTTTTATTTTAAAGGGAGAATTGGGGATATGAGAAAACTGTAATATTGTTTCATGCCATTAAATTCCATATGTTTAAAAAGGGTTAAATGTAAGTATGTAATTATGTTAAACACATCTAATATATGCCTTTTGAGAGTCAATTGTTAGCAGAATATTTTCTGCTGTTTTTTCTTCATGAAAGTGTGAATGTCTCCCAATCTGTGGGAAAGTAATTTCCCTATCCAAAAGAAATGTCAAAAAGCAATCCATGAGAAGATAGCTTTATAGGATTAAATAAATTTTAGAAAGAAAGCTTTTGCTGTGATTTATTAAACCAACTCAGAATTGTAATTTTTAGGGTGTGATTTATACTTATAAATCTTTATAATAAGTGTAATATTATAATGAAACCTCTGGCTGCACATAACATTTCAGCTGTGTCAGAGTAAACATTGAAGCTTTTTTCACTAAAACCATTTAATATGAGTTCTCACAGTAGCCTTGACGGCTGTGTAAACAATTACATGGAGACTGACCTGCAATCTTTGCTGGCTTTGTTGTCATTTTTAGCAGCTATTGTGCAGTTAAGCTCTCCATATTTTAAATACTGCAGATACCCACATGCGCAAGAGGCAACAGTTTACACTTGTATGCACATGCTCAATGTGCATGAATGGTCATGTGACTTGTGTTTTCGGCCATGTAGTGTAGACGGAGATTGTTTCTGAAATCTGCGGAAACGCCAGTGTAGACGAGGATCGTTCTCATTTTAAAACGCCATTTTAAAACAAAACGCACTAGTGTAAACGAGGCCTGAAACGCAACCCCAGCGTTTTCAAACTAAAGCGGGCTCTGCAGCGTTTTCGAGGTTCGTAGTGTAGCAAAACTTATGCGCTTTAAAACTAAAACGCACTAGTGTAAACGGGGCCTTAGTATGTGTATGTATGGCTTCAAGACAGCAACATACATCTCTGTTGTACTGTATTTGTGTGTTTTATTATCTCTTTACTTTTTCTCTTTCTATTCAGTATTCAGTATTCTTGCTCTTCATTTATAATTACTGTTTAATCTAATATCATTGTCGTCTTCAAGTTAGAGACTGAGAGAGAGGTCTTGTAACGAGGCTAAATCTAACAGCATTTAACTTGTCAAAAAATGCTAAAAAAATTTCTTTTATGAATATTATTACTGAGCAGCCGGTATCGGGCCTGATACCAAGCTCGTGTACTTGTACTCGTACTCGTAAAAATACCCCCGATACCAAAGACTGATACCTCACGTGACGTAACTGAGAAGAATTTTCCGTGCACAGAGACACCGACGGCAGCAGCAGAAACAATGTCAGCCTCAGAGGTGTGGAAATACTCCAAAATTAATGATGACAACACACACATTGCGAACTGCATGCTTTCAATCACAATTCGTTATCGATTAGTGAAGGCGGAATCACGCTGAATGACACAGACCAGAAACGCTCTCTCGCGCGAGCTCTCTCTTTCTTGCGCGCAATCCCAGTTCTCTCACAGCGTGAGAGAGTATCTCACGTAAATACAGTCGGTTATGGCTTAAGTCGACGTAAACATTTGGGTGAAAACAGGATATATGCCAGTATCCAAGGATTCGGTCTTAAAGGGACCGTAGCCTATATTTGTCATTAATGTTAATAAAACAACAAAAAATGTTAAATAAATGTATAGACCCTTTTACAGCCCACGTGATCAAATAGTCGCGTGCGCATTTTGGCAACGGAAGTGGTGTTGTTCCCCAGTGGTTCTAACGTATTCATAAGCATCCAGTGATTTATATGCTCGTAATTTCTCTCGGGTGTACACGCTCGGTTTCTCAACTAAATACGTATATATATTTTGGCCACTGTATATTTGGCCATCTGCTAACGTCTTCTATCCACTCCACTATAGTACACGGATCTGGTAGCCAGATACCATTTGATAAAGTCAACTTTTAAAATAACTTTCTCTGTCTGTGTTGCTTAATTCGCTCGCGTAGCTTGACACGCTGCTGATTCTTGCCATAGTTTCGTTGCCAATATGCGCGCGCATACGCATATAAGTTTGTGACAAGTACATAAAAATTATTACTTTTTTCATTAGAGTAATAATAAAGAAGCTGTTTCATTCATTAGTCTCACTGTGTTGTGCTTGGAAAACTGCAACAAAAAAAAAAGAGAGAGAGAAATTAATAAATATATAGGCATCGGTATCGGCGAGTACTAGAAAAAAATATCGGTACTCGTACTTGGTCTTTAAAAAATAATAATAATAATAATCATAATAAAACAAATCTCAGACCCATTTGTGCTTTTTGGTATTGCAATCGAGTCACTGAACATTCCAATAATTTTCAGTTATATTAACTAGTAAGTCCATATCTAATTTTATCTGAGCAAGAAACCTAAAACAGGTGAAATGGGACTCTATCTAATATCGGTAAGAATAATCATGTGCACTTCAAGGACTCTTTATTTTGATTTCATTTTGTGTTTCAAAGTATGTTTTCATTTCTTTCTAATTGCTGAATAGTTTGTCACCTCTGTCTAGTTTATGTCTTCATTATCCCTGTTTATTTATAATTCTCAGTTTCCTCAGTTATTATTCTGTTATTGTTCTGACTTGATATCTATATTGCTTTTTCTTCGGATCACCTCCGGCTGTTGGATTATCTTCTTGTTTTTTTCTGTCAGGCAATAAGAAACATGAAGTAGGTCAATCTTTCAGATGAGAAAGTAAGACTTTTTCACAGTATTGTACTGTAGGGGGTTGGACAAAGTAATGTGAACACCTGGGAAATATGATATTGCATACATGAATCTCTAAATTATCATCAACATGATAAAAATAGTTCAAAACCTGTTGCATGATCATAATCATAATTATATATTACCAATTGTGATTCCATATTAACATATTGTCATACTGGTATTCTTCAGGTGCACTCCCATATTCAATATGCAGATACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCTATTTGCTAAAATCATTTAAGTTCATTTTTTTTCCTCATTAATGTACACACAGTACCCCATATTGACAGAAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGCCTTTTTGGGAAAGATGCAACAAGTTTTTCTCACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACATTGGTGGACAGCTATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTCGTTATTTTAGCTGTGTGCTTAGGGTCATTGTCTTGTTGGAAGGTAAACCTTCGGCCCAGTCTGAGGTCCTGAGCACTCTGGAGAAGGTTTTCGTCCAGGATATCCCTGTACTTGGCCGCATTCATCTTTCCCTCAATTGCAATCAGTCGTCCTGTCCCTGCAGCTGAAAAACACCCCCACAGCATGATGCTGCCACCACCATGCTTCACTGTTGGGACTGTATTGGACAGGTGATGAGCAGTGCCTGGTTTTCTCCACACATACCGCTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU119097 True 8931 lncRNA 0.39 2 5199322 5208279

Neighbor

gene id symbol gene type direction distance location
CI01000018_04843213_04852105 ANKRD33BA coding upstream 345971 4841881 ~ 4853351 (+)
CI01000018_04834805_04838328 ROPN1L coding upstream 360922 4834491 ~ 4838400 (+)
CI01000018_04823817_04825235 SAT1B, SAT1, SAT1A.1, SAT1A.2 coding upstream 374023 4823817 ~ 4825299 (+)
CI01000018_04677346_04694247 PAN3 coding upstream 504695 4677159 ~ 4694627 (+)
CI01000018_04654210_04656581 PDX1 coding upstream 542227 4653729 ~ 4657095 (+)
CI01000018_05217404_05218896 NA coding downstream 9125 5216452 ~ 5222616 (+)
CI01000018_05252991_05253583 PKIA coding downstream 44712 5252964 ~ 5254493 (+)
CI01000018_05500930_05501895 PEX2 coding downstream 292433 5500712 ~ 5502185 (+)
CI01000018_05840337_05846290 CSN5, COPS5.S, COPS5 coding downstream 632058 5840337 ~ 5846434 (+)
CI01000018_05850844_05856405 PPP1R42 coding downstream 642565 5850844 ~ 5856646 (+)
G104742 NA non-coding upstream 172968 5025971 ~ 5026354 (+)
G104677 NA non-coding upstream 398452 4797249 ~ 4800870 (+)
G104628 NA non-coding upstream 409802 4788146 ~ 4789520 (+)
G104625 NA non-coding upstream 414312 4784577 ~ 4785010 (+)
G104673 NA non-coding upstream 438490 4760600 ~ 4760832 (+)
G104908 NA non-coding downstream 262072 5470351 ~ 5488100 (+)
G105549 NA non-coding downstream 300131 5508410 ~ 5508717 (+)
G105556 NA non-coding downstream 311059 5519338 ~ 5529883 (+)
G104670 NA other upstream 439554 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 825910 4368179 ~ 4375866 (+)
G104258 NA other upstream 1507803 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 3214011 1924489 ~ 1985311 (+)
G102895 NA other upstream 3613660 1582913 ~ 1585662 (+)
G106429 NA other downstream 1673332 6881611 ~ 6886325 (+)

Expression


Co-expression Network