XLOC_008209 (si:dkey-7i4.8)


Basic Information

Item Value
gene id XLOC_008209
gene name si:dkey-7i4.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 807897 ~ 822471 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016551
AaacgggacttttattttgattctAGTGCGTGACGTCATAAAACTGCGCCACACTTCTGCATAGTTTGTTTCATCTGAAGAAAGGACAAACACAGAAgatctgctgaagcgactgagctcaggctgttataaagatggcatttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaaCAGACTGAAGAAGCTTTCagagtcaaacatgaagatcctgaggaacaaacagAACACCTGATGCCACTCAAAGAGGAGGGTCAAGATCAGAATGAAAAGGAAGAGGGGGATCAGGATGAGGGATGTCTTGATTTCAGATCTGGAGAAGAATCAGAACAGACGGAAACTTCTTCCCAAGAAACAGCCCAGAAGACCAAATCTAACACCTGTcttgagtgtggaaagagtttcacttgGAAACAAAGCCTTAAAAAACATATGCAGTTTCACACTGGAGAAAATCTGTACACTTGTCAAgactgtggaaagagtttcacttgCAAACAAAACCTTACACACCATATGAGGGTTCACACTAGGGAAAAGCCTTACAATTgtcaacagtgtggaaagagtttcgctTGGAAACAAAACCTTACAGAGCATATGAACTTTCACTCAGGGAAAATGCCTTACAATTGCCAACAGTGCGAGAAGAGTTTCATCTGGAAGCAAAATCTTACAAAACATATGAAGTTTCACACTGGAGAAAATCTGTAcacctgccaacagtgtggaaagagtttcagcggGAATCAATACTTTGTagaacacatgaggattcacaccggagaaaaGCCGTTCACCTGCCAGaactgtggaaagagtttcataTGGAAAAAAAACCTGTCAGAACATATGAGGACTCACACTGGAACAAAGCCGTACACTTGCCAGCAGTGTGGACAGAGTTTCACTACTAAAACAAATCTTACAAGACACCTTAAAAGGAAAGTTCACACTAAAGAGAGAAGCATTgaacatgccaacagtgtggacacTGTGGAGCTTCAGAAATAGATTTTACCTTGATTCTCATGTGGTGGTTTATTCTGGTTAGAAGCCTCACACCTGTGGATTGTGGCAAGAACTTTAAATCTCTCAAGACACATGAACATTCACACTGGGGGTTTGTTTTCAATGTGGAAGACGATTCAGAACGTAAAACTTGATTATCTTTCAGGAGAGGattcttagggcgtactcacactatgccatctgtaccgtgcccaggcccgtttcccgaatcgtttgagaagtgtaagtgcgctgaatcgggctcaagcacgcttcacttggccggccctggcccggttggaagaggtgtgcctgagcgcggttcacttgggctttgggcTTAAAAGctagacgtgactttaagggactgtttcatatggatttattaataattctgactgttcagtgaacacaaactgccgtagtttattaaagacgcaaactcctcactgcaccacagctgcaccttcagcagacctcctcattcctgcagcacgagagctttatgattgtttatgagcgccaaaaatggcggatctgttcggcgaaatatctgactgcgtgtccccgcatccctaaggactgtttggcgaaatatttgacggcatatcaaatgactgacacgatataactagagaaatctccacggtgctgctgagtgagagagcgcttctcactgaacagcgcagcagcgatgacgtaagcgtgccgaagcccgtttgtggtgtgagcgcgggccgtcgggggagacgggaggggggacaagcgtgctttggcctggttcgaggcaactgtacctagtgtgagtacggcctaagacaACCAAATCAGGAATCATTAGTGTGGAGTTTCATAGGCAGGACGCAGgtcatgagtaggcccacacggaatctgcgcgtgcatcATTGAGTCCATGTATttacatgtgtaaa
>TCONS_00016552
AAAGCGTTtaacaatacaattattatttttactttcagtTATGATTAAAATGAATAGATGCAAAGCAACACTGTCCATAatctttaaaacataatataaatatgatGCATCTGTATAATCTGTGTGTATTAACGGCTTTTTAATGCTAGttttattgatttgattgataATGGCTGTGAACTATCACTCTGACTCCCTCACTAGTGCACTGACTACTGAACTAGAGCGCTGATGGAGACTGGATTTGTGTCTTACTGTTCATTATTCTGATCTTCAACAGGACAAACACAGAAgatctgctgaagcgactgagctcaggctgttataaagatggcatttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaaCAGACTGAAGAAGCTTTCagagtcaaacatgaagatcctgaggaacaaacagAAGACCTGATACCACCTAAAGAGGAGGGTCAAGATCagaatgaaatggaagagaaTGATCAGTTTGAGGAATATTGTGACTTCACACCTGAAGAAGATTCAGAACAGACAAATACCTCTTCAGAAGAAACAGCCCGCAAGGCCAAATCTAATACCTGCCATCAGTGTGGAAGGAGTTTCACCCGTAAACAGTACCTAATAGAACACATGACAATTCACAATGGAGAAAAGCCTTACacttgccaacagtgtggaaagaatTTCACTTGGAAACAAAACCTGAAAATCCATATGAGGACTCACACTGACGAGAAGCCTTACACTTGCcaccagtgtgggaagagtttcgcTCGAAATCAAAACCTTTCAAAACACATGGGTGTTCACACCGGAGAAAAGCCTTACACGTGTGAGTGCTGTGGAAAGTGTTTTACTCGGCAACAAAACCTTACAGGACACATGAGGGTTCACACCGGAGAAAAGCCTTACACTTGCCAACACTGTGGACAGAATTTCACTTGGAAACAAAACCTTACAGGACATATGAGCATTCACACCGGAGGCAAGGCTCACGCCTGCAAtcagtgtggaaaaagtttcaCTCGGAAACAAAACCTTGTCGACCATATGAAGATTCACACTGAAGGAAAGGCTCACACCTgccatcagtgtggaaagagtttcactcgGAAACAGATCCTTACAGAACATatgaggactcacactggagaaaagccttacacttgccaacagtgtgggaagagtttcgcTACTAAAGCATACCTTAAAAGACACAAgagagttcacactggagagacaaACCTTAcacctgccaacagtgtggacaGAGTttcagatataaacattattttgattCCCATGTGA
>TCONS_00016553
GACGTCATAAGGTTGCGCCGCGGACCCACATCTTGTTTTTCAGTCGGAGAAAGGGTAAaactgctgaagcgactgagctCAGACTGTTGTAAACATggagtttattaaagaggagagtgaagacatcaagattgaagaaacattcccTGTCAAACATGAAGAGATTGAAGAATTCATAATCAAATATGAAGATCctgaggaacaaacagAAGACCTGATACCACCTAAAGAGGAGGGTCAAGATCagaatgaaatggaagagaaTGATCAGTTTGAGGAATATTGTGACTTCACACCTGAAGAAGATTCAGAACAGACAAATACCTCTTCAGAAGAAACAGCCCGCAAGGCCAAATCTAATACCTGCCATCAGTGTGGAAGGAGTTTCACCCGTAAACAGTACCTAATAGAACACATGACAATTCACAATGGAGAAAAGCCTTACacttgccaacagtgtggaaagaatTTCACTTGGAAACAAAACCTGAAAATCCATATGAGGACTCACACTGACGAGAAGCCTTACACTTGCcaccagtgtgggaagagtttcgcTCGAAATCAAAACCTTTCAAAACACATGGGTGTTCACACCGGAGAAAAGCCTTACACGTGTGAGTGCTGTGGAAAGTGTTTTACTCGGCAACAAAACCTTACAGGACACATGAGGGTTCACACCGGAGAAAAGCCTTACACTTGCCAACACTGTGGACAGAATTTCACTTGGAAACAAAACCTTACAGGACATATGAGCATTCACACCGGAGGCAAGGCTCACGCCTGCAAtcagtgtggaaaaagtttcaCTCGGAAACAAAACCTTGTCGACCATATGAAGATTCACACTGAAGGAAAGGCTCACACCTgccatcagtgtggaaagagtttcactcgGAAACAGATCCTTACAGAACATatgaggactcacactggagaaaagccttacacttgccaacagtgtgggaagagtttcgcTACTAAAGCATACCTTAAAAGACACAAgagagttcacactggagagacaaACCTTAcacctgccaacagtgtggacaGAGTttcagatataaacattattttgattCCCATGTGAAGATTCATAGTAGATAAAGCTTCACGCCTGTGGACTGTGTGGTAAGAGCGTTACATGCATGAAATGTCACACATGGAGATTGTCATACTCATTTACTCTAAAActatgtataagtgtgtatgttttACATAGGTCGCTGTGTTAGAGTAGCTTAATAAACCTGTGTTATTTTTAAGATTAGTGTTTGTGTGGTTATGTGTTTACTAATTTACTGTCTCGGCTGTTGCTATAGTTTTATATTCTTATTGCTGGACGTGTAATAGACCAGGGGTGCATTTTCGGAAACCaacgttagccaactaaggtttgtaatt

Function

symbol description
si:dkey-7i4.8 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-124 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000032285 ENSDARG00000098032

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016551 False 1969 mRNA 0.45 3 807897 814805
TCONS_00016552 False 1332 mRNA 0.41 2 808647 822157
TCONS_00016553 True 1407 mRNA 0.42 3 816556 822471

Neighbor

gene id symbol gene type direction distance location
XLOC_008208 si:dkey-7i4.1 coding upstream 2786 791220 ~ 805111 (+)
XLOC_008207 znf970 coding upstream 20349 781717 ~ 787548 (+)
XLOC_008206 NA coding upstream 39462 768181 ~ 768435 (+)
XLOC_008205 si:dkey-7i4.24 coding upstream 86339 714203 ~ 721558 (+)
XLOC_008204 NA coding upstream 138453 658362 ~ 669444 (+)
XLOC_008210 si:dkey-7i4.7 coding downstream 966 823437 ~ 827462 (+)
XLOC_008211 si:dkey-7i4.14 coding downstream 12226 834697 ~ 845901 (+)
XLOC_008212 si:dkey-7i4.5 coding downstream 24297 846768 ~ 1010521 (+)
XLOC_008213 si:dkey-77f5.11 coding downstream 28358 850829 ~ 860130 (+)
XLOC_008214 si:dkey-77f5.11 coding downstream 41460 863931 ~ 910502 (+)
XLOC_008463 BX663520.1 misc downstream 20429720 21252191 ~ 21252282 (+)
XLOC_008200 NA non-coding upstream 260016 546153 ~ 547881 (+)
XLOC_008197 NA non-coding upstream 308074 497208 ~ 499823 (+)
XLOC_008218 CU571333.1 non-coding downstream 256518 1078989 ~ 1079104 (+)
XLOC_008225 NA non-coding downstream 399346 1221817 ~ 1234693 (+)
XLOC_008229 dre-mir-15c non-coding downstream 721215 1543686 ~ 1543768 (+)
XLOC_008230 dre-mir-16a non-coding downstream 721386 1543857 ~ 1543943 (+)
XLOC_008232 NA non-coding downstream 870726 1693197 ~ 1718629 (+)

Expression


Co-expression Network