CI01000026_04333601_04341386


Basic Information

Item Value
gene id CI01000026_04333601_04341386
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4333601 ~ 4341491 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_04333601_04341386.mRNA
ATGAACGCGGAGGAAGGAACAAGGGTTGAATCTGAAGAAAAAGACACGAGTGAAGGTGTTGTGTCTTTTGCTCCAGGTTTTTCTTGTATTGAGGGTTTGGAGGAATATACTGGCCTGCGCTGCCTATGGCTTGAATGTAATGGCATTCGGAAGATTGAGAATCTGGAGAATCAGACAGAGCTTCGCTGTCTGTTCCTCCATCAGAACCTCATTCATACTCTGGAAAACCTGGAACCACTCAGCAAGCTATGCACACTCAATGTCTCAAACAATTATATCAAGGTCATTGAGAACATATCCTGCTTGAGTGAGCTGTCCACGCTGCAGATCTCCCATAACACACTGGAGAATGTGTGTGACATGGAGGAGCTGTCACACTGTCCATCCATCAGTGTTCTTGATCTGTCTCACAACCACATCAGAGATCCAGCTCTCATTAATGTTCTAGAGAGAATGCCTGACTTGCGTGTGTTAAATCTAATGGGTAATGAGGTCATCAAAAAAATCCCAAACTACAGGAAGACTCTGATTGTGCGTCTAAAGCAGTTGACCTATCTAGATGACCGGCCTGTGTTTCCAAAAGACAGAGCATGTGCAGAGGCGTGGGCAGCTGGTGGTCTGGAAGGTGAACGAAAAGAAAGGGAAATGTGGCAAACGAGAGAAAGAAGGAAGATCCAGGAAAGTTTGGATGCAATGGCTGCTATCAAAGAGAACGCACTGAAACAGCGGGAGGCTCGAGAGCTTTTGGAAAAAGGAATCATAGAGCCTCCAACTTCTGTTATTGAGAATCAGAGCACTCAAAACGAGACACCAGAAATTGCACCTGCAGAGAGTGACACATCAGAAACAGCACAGGAACAAACTGATCCATTAGCATCAGAGACACACCACATTTGCCAATCTGCATCTGATCAGGAACAGATTATCCAAACAACACTTGATCAAAATCATTCCAACCAGTCAAAACCAGAGAGACACCAAACAGGTTTAGAACAGATTCTCCATCCATCATTTGACCAGGAACAGACTGGTCAATCAGCAACAATGGGATTGAAGACTAAAGAGGAGAAGTACAAGAAAATTCTAGTGCAAAACCAAGGCACAAAACAATCACAGTCACATAACAGCGGTTCAGTTGCAGGTCCTGGTGCTCTCATCACTGAACTGATCTCTGAGGATGAAATAGAGACTATCACACTGTCAGAGAGACCAGCATTAACAATTGACGATCTTCCGGACCTTGAAGATGAAGAAAATAGCCTGATACTCCCAGCAACATCACAGAGTGTCATCCGTCCGAAGATTCAGGTCATCTCTAGCGATGAAACAGAATCAGAAGATGTTACAAGCTTGTATCACTGGCCTCAGTCAGACGCTGTGGCCCCTGACCGATCGCAGCTGCTTATTAGTGTCTCCACTAAGAGAACCTCAGTCAAGCAGCAGAGCCCTGCCTGTATCAGTCAACCAGAGGCAGGAGATGACTTCCCCAAGACAGCAGGAACTAGACAGACTGTTTTGATTGAGGAACTGGACTGAGTTTTTATGGTTTAACTAATGGATGAAACTATATGGTAGTGTTTCCCAAACCTTGGATGTGAATTTAAATTGGGTGTCTACCTGATATATAAAAGGTGTTTAACA

Function

NR:

description
Leucine rich repeat containing 50

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_04333601_04341386.mRNA True 1641 mRNA 0.44 8 4333601 4341491

Neighbor

gene id symbol gene type direction distance location
CI01000026_04327206_04331151 DOK4, DOK5 coding upstream 2450 4327206 ~ 4332085 (+)
CI01000026_04209762_04249320 CCDC102A coding upstream 83304 4209392 ~ 4250297 (+)
CI01000026_04172127_04176264 NA coding upstream 157173 4171889 ~ 4176428 (+)
CI01000026_04062224_04065987 SLC7A6OS coding upstream 267173 4062224 ~ 4066428 (+)
CI01000026_03725294_03727306 NA coding upstream 606190 3725294 ~ 3727411 (+)
CI01000026_04344703_04357534 GFOD2, COG4 coding downstream 3212 4344703 ~ 4357660 (+)
CI01000026_04361551_04365574 GFOD2 coding downstream 19570 4361061 ~ 4366072 (+)
CI01000026_04367338_04389547 NA coding downstream 25650 4367141 ~ 4389639 (+)
CI01000026_04390431_04394954 OGFOD1 coding downstream 48505 4389996 ~ 4395221 (+)
CI01000026_04398682_04402882 TRADD coding downstream 57013 4398504 ~ 4403071 (+)
G128175 NA non-coding upstream 49990 4283412 ~ 4283611 (+)
G128162 NA non-coding upstream 62155 4271179 ~ 4271446 (+)
G128156 NA non-coding upstream 73311 4260063 ~ 4260290 (+)
G128084 NA non-coding upstream 169585 4140151 ~ 4164016 (+)
G128079 NA non-coding upstream 173712 4132956 ~ 4159889 (+)
CI01000026_04412437_04412814 NA non-coding downstream 70858 4412204 ~ 4412878 (+)
G128117 NA non-coding downstream 90604 4432095 ~ 4439272 (+)
G128125 NA non-coding downstream 111712 4453203 ~ 4455234 (+)
G128115 NA non-coding downstream 120706 4462197 ~ 4466118 (+)
G128129 NA non-coding downstream 132187 4473678 ~ 4477775 (+)
G127979 NA other upstream 570615 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 1672772 2658605 ~ 2660829 (+)
G127519 NA other upstream 1906595 2393683 ~ 2427006 (+)
G127531 NA other upstream 2021466 2309322 ~ 2312135 (+)
G128137 NA other downstream 89071 4430562 ~ 4431201 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other downstream 214285 4555776 ~ 4557613 (+)
G128585 NA other downstream 1608322 5949813 ~ 5950122 (+)
G128601 NA other downstream 1642388 5983879 ~ 5991761 (+)
G128757 NA other downstream 1984705 6326196 ~ 6326785 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location