CI01000026_04872499_04877980


Basic Information

Item Value
gene id CI01000026_04872499_04877980
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4872499 ~ 4878351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_04872499_04877980.mRNA
ATTCATTATGACCTGTAAAGATGAGACCACTCAAGCACATGGCTATTGCTCTCCAGAGTGGCTTTGTGTGTATGAGAGTGGGTTTAAGGGTTATGGTCATGAATTCAGTTTGTCTTTGACAATAAACAACCTCCGCACCATGGATTCTACTCCGCCTCCAGCTATGGGTTCATTACAGAATACTTCACCTGACCAGAATCCAGTGGAGGTTGCACAGCTCAGAGCCAGGATCGCTTATCAAAGTGATGTACTACAGGAATTTCAGGAACTTCCAGAAAAGTTTGATGGGTCTGCTGACAAATGCAAGGGTTTTCTGAGGCAATGTTCAATATATTTTTCTCACCAACCTGACGCCTTCAATCAAGAATCAGCCAAATGTGCATTTATGATGAGCTTGCTTACTGGTAAGGCATTAGAGTGGGCCACGGCAGTTTGGGATAATGAACAAATTCAGAAGTCCTTCAAGTATTTCTCGCAACAAATTAAGGAAGTTTTTGAATACCCTGCAGGGGGAAGACACATTTCTGTACAGTTATTACATCTACGCCAGGGAAAATTATGTGCAGCTGATTATGCAGTGCAATTCCGTACTTTAGCAGCACAGAGCGGTTGGAACGATGTTGCTCTCAAATCAGTGTTCGGTGAAGGTTTAAATCCCACCCTGCAAGCTGAGCTAGCTACCAGGGATGAATCATTAACCTTGTCTGAGTACATTACCCTGACCGTTAAGATTGACAATCTCATGCGCAATTGTCCTCGATCCAGTGCACCCAAGCCTGTCCCTGTTACTACCTCATCTCCCGTTACAGTGTCAGCCGACTCGGATGAACCCATGCAAATTGGGCGTGCAAGGGTGCCCGAGGAGGAACGCCAGCGCAGACGAGATGAGGAACTATGCTTCTACTGTGGCCAACCCGGACATCTTTGTAACGCCTGCCCAGGTAAGGCCAGACCACCAGCTGGATCCTCTAAAAGGGGACTTCCACCGGGATCATCCAGATCGACCGGCACCCGGACCAAGGGGACGGCCCAGGAGAAGAACACCTGGAGGTGTCCCTAGAGGGGGGAAATCTGTAACAGTTCAGCCCATGCACAGTTCATCCCTCCAGCAGAGGGAGCCATCACCTGAGTTTTAGTGGTTCTTCCTGTTTTTATTCTCACTTCCTGTTTGTAGCCTTATAAGCCATGTGCTTCTCTGAACACCTTGCAAAGTATTGCATGTTAATTCTGCCTTACAAAACATTTACTCTTATCTTTGCCTGTTACTTGTGCCTTGACCCGTTAGCCTGTTTTTGGATTTACCCTCTCGTCTACTGTTTTGGATGTAGCCTGTTGCCTGCCTGCCTTGCTGTGTTTTTGAACCTTGCCTGGACTTTGATTACGTCTTTTGCCTGCCGTCTTGTATTGTTCATACTTAGTTTGTCTTTGACA

Function

NR:

description
gag polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_04872499_04877980.mRNA True 1431 mRNA 0.47 4 4872499 4878351

Neighbor

gene id symbol gene type direction distance location
CI01000026_04848513_04851412 ISL2, ISL2B, ISL2A coding upstream 20656 4848513 ~ 4851843 (+)
CI01000026_04820538_04825963 FBXO22 coding upstream 46070 4820132 ~ 4826429 (+)
CI01000026_04812926_04818639 TPM1.L, XTM4, TPMA, TPM1-2, TPM1 coding upstream 53335 4812926 ~ 4819164 (+)
CI01000026_04773209_04807191 TLN2A, TLN2 coding upstream 64937 4771859 ~ 4807562 (+)
CI01000026_04593208_04599259 ITLN4 coding upstream 272962 4593130 ~ 4599537 (+)
CI01000026_04891501_04898456 PSTPIP1B coding downstream 13150 4891501 ~ 4899035 (+)
CI01000026_04905238_04906008 NA coding downstream 26716 4905067 ~ 4907336 (+)
CI01000026_04974839_04980270 NA coding downstream 96488 4974839 ~ 4980909 (+)
CI01000026_04985417_04990345 NA coding downstream 107066 4985417 ~ 4990376 (+)
CI01000026_05004965_05013169 NA coding downstream 126614 5004965 ~ 5013588 (+)
G128273 NA non-coding upstream 123310 4748884 ~ 4749189 (+)
G128223 NA non-coding upstream 225599 4643897 ~ 4646900 (+)
G128222 NA non-coding upstream 229551 4641378 ~ 4642948 (+)
G128219 NA non-coding upstream 240430 4631834 ~ 4632069 (+)
G128218 NA non-coding upstream 245035 4625384 ~ 4627464 (+)
G128316 NA non-coding downstream 11095 4889446 ~ 4889697 (+)
G128354 NA non-coding downstream 37329 4915680 ~ 4916311 (+)
G128358 NA non-coding downstream 45066 4923417 ~ 4924257 (+)
G128359 NA non-coding downstream 46179 4924530 ~ 4924741 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 316182 4555776 ~ 4557613 (+)
G128137 NA other upstream 441298 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 540414 4327206 ~ 4332085 (+)
G127979 NA other upstream 1109513 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 2211670 2658605 ~ 2660829 (+)
G128585 NA other downstream 1071462 5949813 ~ 5950122 (+)
G128601 NA other downstream 1105528 5983879 ~ 5991761 (+)
G128757 NA other downstream 1447845 6326196 ~ 6326785 (+)
G130552 NA other downstream 2216702 7095053 ~ 7096652 (+)
G130967 NA other downstream 3310023 8188374 ~ 8189073 (+)

Expression


Co-expression Network