G128222


Basic Information

Item Value
gene id G128222
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4641378 ~ 4642948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU145691
GAAGAATCTCCGTTGCTGTAGCAACAATATTGATCTAGGCCAGAGTCTGAGCTAAGGTCGCACACAGGTTCTAGTTTAATGCCATCCATGTCTAGACCTGACTGATCAGGAGAGGGCTGAATGTCCAGGTAAAATCCACCAATTGCTGAATCTGCCTTTCCCTCCTCTGGGGTCTGACCGTTCACATATCCACTGAGGTCATCGGGGAGCTCTGTGACGCCATTGGTGGACAGGGCGTAAGAGGGTGTGAGTGGCTCTGCCTCTCCTGGAGGTTGAGGTTCCCGCCCCTTCTCTGTCTCATCACCCACTTTCTCATCCTGCTGCTGTTGACGGTGTTTCTGAACTTCAGCGAAAAGACTGTCCCTCTGCTTCTTAGACATGCGGCCGAACTTTACAGCTGCGAGTGACCACATCTCTTGACATGCCCACTGCTAAGCATTTCTGCAGGCGACAGTGCTGGCAGCGGTTTCTGCTGGTACGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU145691 True 483 lncRNA 0.53 2 4641378 4642948

Neighbor

gene id symbol gene type direction distance location
CI01000026_04593208_04599259 ITLN4 coding upstream 41841 4593130 ~ 4599537 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A coding upstream 83765 4555776 ~ 4557613 (+)
CI01000026_04503901_04507434 RAB8B coding upstream 132685 4503901 ~ 4508693 (+)
CI01000026_04497986_04501262 NA coding upstream 139679 4497926 ~ 4501699 (+)
CI01000026_04424762_04428710 APH1B coding upstream 212668 4424762 ~ 4428710 (+)
CI01000026_04773209_04807191 TLN2A, TLN2 coding downstream 128911 4771859 ~ 4807562 (+)
CI01000026_04812926_04818639 TPM1.L, XTM4, TPMA, TPM1-2, TPM1 coding downstream 169978 4812926 ~ 4819164 (+)
CI01000026_04820538_04825963 FBXO22 coding downstream 177184 4820132 ~ 4826429 (+)
CI01000026_04848513_04851412 ISL2, ISL2B, ISL2A coding downstream 205565 4848513 ~ 4851843 (+)
CI01000026_04872499_04877980 NA coding downstream 229551 4872499 ~ 4878351 (+)
G128219 NA non-coding upstream 9309 4631834 ~ 4632069 (+)
G128218 NA non-coding upstream 13914 4625384 ~ 4627464 (+)
G128213 NA non-coding upstream 48606 4592396 ~ 4592772 (+)
G128199 NA non-coding upstream 92201 4548934 ~ 4549177 (+)
G128193 NA non-coding upstream 124631 4516520 ~ 4516747 (+)
G128223 NA non-coding downstream 949 4643897 ~ 4646900 (+)
G128273 NA non-coding downstream 105936 4748884 ~ 4749189 (+)
G128316 NA non-coding downstream 246498 4889446 ~ 4889697 (+)
CI01000026_04905238_04906008 NA non-coding downstream 262942 4905067 ~ 4907336 (+)
G128354 NA non-coding downstream 272732 4915680 ~ 4916311 (+)
G128137 NA other upstream 210177 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 309293 4327206 ~ 4332085 (+)
G127979 NA other upstream 878392 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 1980549 2658605 ~ 2660829 (+)
G128585 NA other downstream 1306865 5949813 ~ 5950122 (+)
G128601 NA other downstream 1340931 5983879 ~ 5991761 (+)
G128757 NA other downstream 1683248 6326196 ~ 6326785 (+)
G130552 NA other downstream 2452105 7095053 ~ 7096652 (+)
G130967 NA other downstream 3545426 8188374 ~ 8189073 (+)

Expression


Co-expression Network