CI01000026_04891501_04898456 (PSTPIP1B)


Basic Information

Item Value
gene id CI01000026_04891501_04898456
gene name PSTPIP1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4891501 ~ 4899035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_04891501_04898456.mRNA
AGCATAAGACGTCAAGAGATCAAAGTTGCCCAGCCGAAAGCGACACGCAGTTTCTTCCTCATTTCAAACTTTTCATTTGACTGTTGCCTCTGTAGAGTGTGTTTCTTCAACTTTGACAACATCTTTAATGGTACAGACTTTATGGACCAGTCGGGTTATGAGGCCATATTGCAGAGGTTACATGATGGCAGACACATGTGCAAAGATGTAGAAGACCTGATGAAAATGAGAGCGCTAGCGGAAGAGAAGTATGGACGAGATCTGGTGGCAATTGCTCGGAAGGCAGAAGGTCAAACTGAAATTGGAACATTGAAGGCATCGTTTGACAAGTTAAAAACAGAGATTGAGAAGGCAGGAAACCTGCACATCCAACTATCTGAAAGGATAAAGGAGGAAGTTCAGAAAATAGAGGTGTTTCGAGAACACCAGAGGGAACAGAGAAAAAAGCTTGAAGAGATTATAGAAAAACTTCAGAAGCCTAAGATGGTGTTGCACAAAAAGACCATGGAGTCAAAGAGGTTATATGAGCAGAGGTGTAAGGAGGCTGATGAAGCTGAGCAAGCAGTGGGGAAGAAGACAAATGTGAACACATCCACCCACCGGCAATCAGAAAAGGTGATGAACAGGGCCCGGTTATGCAGGCAAGCAGCAAACCTGGCAGAAAAGCAATACAGATGGAATGTTGATCAGCTAGAGAAAACTTGCCAGGACTGGGAGAGCACATACAGGAGCGCGTGCGAGGTGTTTCAGCAGCAGGAGTCTGAACGCATTAATATCTTGCGCTGTGTTTTATGGGATCATTGCAATCTGCTTTCTGTGCAGTGCGTCCGGGATGATGATTGCTATGAGGAAGTACGGAAGATTCTAGAGCAGTGCGACATTATCACTGACAACAACTGTTTCATTAAGATGAAAAAGACTGGCTGTCGCCCCCCAGCTCCCATTGAGTTTCAGTGTTACTCTGACGTGGACACTAATGGAGGAGTCGGGAGGGTTGAAATGAACAGATTATCTGTCATGCTTCCAGGGATGTCTTTTAGTGGGTGCCCTGAAGCCGGGAGTAATTTGGGTGGAACATACACACCGGCTCAACAAAAGGGAGGAGTAATTGAGGAAAAGTACATGGTGTTATATGATTTTAAAGCTCAGGAAGGTGATGAGCTGTCTGTCAGTAAAGGACAAGTTGTCACAATAACTGAGCAAGGCGAGGATGGGTGGTGGAGAGCGTGGAGGGATGGAATATCTGGGCTGGTCCCTGGAACGTACTTGACCAAAATCTCACCACACAGTACACGTCTCGCTGCTGCTCATCCTGAAAGTAATCCCATCAAATAGAATTTAGTAGTCATTACACTAAGTCTAACTAAGGTTCTTTGTCAATTAGTTCAGCCTACAAGTTGATGTAGAATTAATACATTAACGTGTACTAGCAGCATGAAAGATTAGCTTTCTTGACAGGCATCTTTAGGATTTTTTTTTTTTTTTTACGATAAAAAAATGAATATTATGAATAATGGAAAAGTTATTCTGCTTGTATAATGATTATATGAGGTTTAATCTAGTTTTTTATGGTTTGTAGTTTGAAAAAATATAAAAAAATATTGTATTGTTTTAGAATTATGAATTCTAAAGATTTATTCTTTTTTTTAAAAATACACCTGTTTAATATATGTATACTGTAATATATGTATACATTTTGTATTATCAATTTTGTAATGTTATTGCTATAATTTATCATGGCCTATTTGTCTGGTATACTGTATACTAATCCATTCAAAAATACCTATGTGCCCTGTGTTGCATGCTAAAATGTAAAGAAAAGTGATTCGCATTCAAGTCCTCTCAAAAAAAGGACACGCAATATCCAAATGCCTTAGCAAAGCATAAAGACATTCAACTGAAGACATATCTGTA

Function

symbol description
pstpip1b Predicted to enable actin filament binding activity. Predicted to be involved in actin filament polymerization. Predicted to be active in actin filament; cytoplasm; and plasma membrane. Human ortholog(s) of this gene implicated in PAPA syndrome. Orthologous to human PSTPIP1 (proline-serine-threonine phosphatase interacting protein 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K12804 PSTPIP1; proline-serine-threonine phosphatase interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_04891501_04898456.mRNA True 1914 mRNA 0.40 15 4891501 4899035

Neighbor

gene id symbol gene type direction distance location
CI01000026_04872499_04877980 NA coding upstream 13150 4872499 ~ 4878351 (+)
CI01000026_04848513_04851412 ISL2, ISL2B, ISL2A coding upstream 39658 4848513 ~ 4851843 (+)
CI01000026_04820538_04825963 FBXO22 coding upstream 65072 4820132 ~ 4826429 (+)
CI01000026_04812926_04818639 TPM1.L, XTM4, TPMA, TPM1-2, TPM1 coding upstream 72337 4812926 ~ 4819164 (+)
CI01000026_04773209_04807191 TLN2A, TLN2 coding upstream 83939 4771859 ~ 4807562 (+)
CI01000026_04905238_04906008 NA coding downstream 6032 4905067 ~ 4907336 (+)
CI01000026_04974839_04980270 NA coding downstream 75804 4974839 ~ 4980909 (+)
CI01000026_04985417_04990345 NA coding downstream 86382 4985417 ~ 4990376 (+)
CI01000026_05004965_05013169 NA coding downstream 105930 5004965 ~ 5013588 (+)
CI01000026_05021876_05024530 NA coding downstream 122841 5021876 ~ 5025921 (+)
G128316 NA non-coding upstream 1804 4889446 ~ 4889697 (+)
G128273 NA non-coding upstream 142312 4748884 ~ 4749189 (+)
G128223 NA non-coding upstream 244601 4643897 ~ 4646900 (+)
G128222 NA non-coding upstream 248553 4641378 ~ 4642948 (+)
G128219 NA non-coding upstream 259432 4631834 ~ 4632069 (+)
G128354 NA non-coding downstream 16645 4915680 ~ 4916311 (+)
G128358 NA non-coding downstream 24382 4923417 ~ 4924257 (+)
G128359 NA non-coding downstream 25495 4924530 ~ 4924741 (+)
G128344 NA non-coding downstream 27501 4926536 ~ 4928831 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 335184 4555776 ~ 4557613 (+)
G128137 NA other upstream 460300 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 559416 4327206 ~ 4332085 (+)
G127979 NA other upstream 1128515 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 2230672 2658605 ~ 2660829 (+)
G128585 NA other downstream 1050778 5949813 ~ 5950122 (+)
G128601 NA other downstream 1084844 5983879 ~ 5991761 (+)
G128757 NA other downstream 1427161 6326196 ~ 6326785 (+)
G130552 NA other downstream 2196018 7095053 ~ 7096652 (+)
G130967 NA other downstream 3289339 8188374 ~ 8189073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location