CI01000026_05560160_05585916


Basic Information

Item Value
gene id CI01000026_05560160_05585916
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5559861 ~ 5586104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_05560160_05585916.mRNA
TTATAAATGGCAGTTAAATGGCTTTCTGCCAGTACTTGTGTCGAAGTTGTGTTAAAAATTATTGCAGTTTATTACAGTAACTATTTTCTCGTTACTGAATATTGTAGACCAACTTTCTCTCGGGATAGTCGATAATGCGCACATAGGGAAATCAAAAACGCAAATAGTTTGTGTTTGTTGTTGTATGAACATTGTGGGCAGGATTTTGCAGGTGGTTTTGTGGTTCTGTGTCAGACAGACAGTCTGCGGAGAAGTCATTTTTGCGTGGGGTGCGGGTGTAAAGTGGCTCGCGAAGAACAATGACCCACATTATGTTTGTGTATGTGTTTATGCTGCTCTTGAGTGGGCTTCCTCTTCCACTGTACTGGCTTGAACTGGCTGAATATTTCAAACAGGTGCTGCCCATGTCTAGCTCTGTGTCTTCTGAACAGATCCATAGATGTCTGTTGGCAGTCCAGATTTCCATTAGGCCTGACGTCTCAGACCCAGGTCCACTGATCTCAGCTTTGCTGTGTCCACGGCACAAAGCAGGGCTCCATTCTCACACTGGTGTCAACGGTCAACTGTTCCTTCCTAAACACACAACTTTCTTAAAACAGCTGCACAGATTCAGTATTGTAGGTGATGTTTATGACCTCACCAAATCGCTGTTTAGCTGTTTCTGCCCCAGGTTATCCTGTTTGGGTTTGTTCCAGAGTAAGGCTAATGGATCATTCCCTGGTCAAAGCAGAAAGGACATGGTCAGCACCTTAACCGAAAGGAGATTTGAGCAGAAATGAGCTTTAAGTTTTAGCAGGCAGTCAAAGACTAAGATTGTCACTCTTAAAATTGGTGCAGTAGATGCCAATATTTCACCTAACATGTCTTGCCCTAAAATTTTTATTTGAAGTTAGTAATTTGTGCTTTAATGTGGAAAATGGTCATGCACATGTGTGGCTTTTATCATGCTGACATTTGTACATCAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_05560160_05585916.mRNA True 967 mRNA 0.42 4 5559861 5586104

Neighbor

gene id symbol gene type direction distance location
CI01000026_05499147_05532039 NA coding upstream 27541 5498793 ~ 5532320 (+)
CI01000026_05468694_05469437 NA coding upstream 90341 5468694 ~ 5469520 (+)
CI01000026_05437276_05463050 APBA2B, APBA2 coding upstream 96126 5437033 ~ 5463735 (+)
CI01000026_05374510_05376059 MCEE coding upstream 183673 5374324 ~ 5377229 (+)
CI01000026_05343830_05367424 MTMR10 coding upstream 192255 5343830 ~ 5367606 (+)
CI01000026_05592701_05627231 TJP1A, TJP1 coding downstream 6597 5592701 ~ 5627930 (+)
CI01000026_05633305_05636501 FAM189A1 coding downstream 47201 5633305 ~ 5636938 (+)
CI01000026_05742174_05769229 FAM189A1 coding downstream 156070 5742174 ~ 5769370 (+)
CI01000026_05771496_05786357 CASC4 coding downstream 185392 5771496 ~ 5786357 (+)
CI01000026_05793556_05805041 CTDSPL2B coding downstream 207452 5793556 ~ 5805125 (+)
G128525 NA non-coding upstream 57730 5501918 ~ 5502131 (+)
G128522 NA non-coding upstream 63569 5496009 ~ 5496292 (+)
G128521 NA non-coding upstream 65918 5493606 ~ 5493943 (+)
G128520 NA non-coding upstream 66872 5492664 ~ 5492989 (+)
G128514 NA non-coding upstream 80533 5479120 ~ 5479328 (+)
G128560 NA non-coding downstream 282152 5868256 ~ 5868582 (+)
G128561 NA non-coding downstream 282833 5868937 ~ 5869164 (+)
G128562 NA non-coding downstream 287379 5873483 ~ 5873730 (+)
G128563 NA non-coding downstream 295989 5882093 ~ 5882325 (+)
G128564 NA non-coding downstream 296476 5882580 ~ 5882878 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 1003544 4555776 ~ 4557613 (+)
G128137 NA other upstream 1128660 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 1227776 4327206 ~ 4332085 (+)
G127979 NA other upstream 1796875 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 2899032 2658605 ~ 2660829 (+)
G128585 NA other downstream 363709 5949813 ~ 5950122 (+)
G128601 NA other downstream 397775 5983879 ~ 5991761 (+)
G128757 NA other downstream 740092 6326196 ~ 6326785 (+)
G130552 NA other downstream 1508949 7095053 ~ 7096652 (+)
G130967 NA other downstream 2602270 8188374 ~ 8189073 (+)

Expression


Co-expression Network