CI01000026_05771496_05786357 (CASC4)


Basic Information

Item Value
gene id CI01000026_05771496_05786357
gene name CASC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5771496 ~ 5786357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_05771496_05786357.mRNA
ATGATTGGCTTCGGCGCGAATCGACGTGGAGGTCGCCTCCCTTCCTTTATCTTGATCGTGTTATTGGTAATTATCGTCATTTTGTCGTTTAACTACTGGAGCGTGTCCACTAAGCACGGGCGGCTGCTGGACGAGCTGGCCGAGGTGCAGACTCAGGTGAAGCGCACGGACGCGGCGCGCTCCCGCCTGGAGAAGAGAAACTCCGAGTTGATGATGCAGGTGGACACGCACCGGAAACAAATCGATCAGAAGGACGGAGACTACAGCGTACTGGAGAGCAAACTGCAGGCCAGGGATGCGCTGGTCAAATCTTGCACCGATGAAAAGAATAAGCTGCAGAATGATGTCAGTGCCCAAATGTCAGAGATTCACAGACTCAAGGAACAGGTAAAGGAGTTGAGACAGGAGGTCATCCGACAGGAAGACCAGCTGAGGGAAGTGCGGAAAAACAGCACCAATATGGAGAAGAAGCTGGAATATGAGAGCTTGCAGTGTGGCAGACAAATAACCGAGCTGAAGGCAGAATATGAGGAGAGCAAAAAAAGAGTGGAAGAAGAGGCAGCAAAACTCAGACAGAGTTTATTAGAGAATCATAAAGCGGATGCAGGGGATCGGCAGGTGAAGGTGGATCTTGATCAGCCCATCAAAAGAAAAGAGGATGACACTGCAGAGCGCCACACAGTGGCTGCACGACGAAATGATGGCCCAGTTCCTAAAGATGATATGGTTAAACCTGGTAGCGATGCTGGCATGCCTGGCATTGAGGACAGTGAAGTGGGCAAGATAGAAGATGCACAGTTTGCCTTAAAGAAGCCAGCCATCACACCACAGAAACACATGGAGCCTGCGGAGGCTGCAGCACTGCTGAAGGAGGAGAGGGCAGGGTTTGGTGCTGGAGCTGGTGCAAGACCAGGGGATGATTTGGCCCATGGGCAACCGCTGGACCGTCCAGACATACCCCATGATGAAAACCTGCGTTTGGGGAACCGTGACATCCCTGTGCAGCAGCAGGTTCCAAAACCAGTGGCTGACAAACCCATGCTGTTTGACGAGGATAATAAGGCAGACATAAAGGCAGATGAGTTTGGGGAGCAGCGCAGACAGCTGGGAGCTGAAGGTTTGAAGGCAGAGGGAGTTGGACCTCCTCCTCCTCATAACCCGGCTCAGGTTCTTCCCAAACCCGTTGACCTGCACAATGGCAGAGATCCTGTGCCCGCTGACCCCCCGCGTCACCGTCAGAGCCGTTTCTTTGATGAAAATGAGTCCCCTGTAGATCCGCAACACGGCAATAAGCTAGCGGACTATAACGGGGATGATGGCAACGTAGGTGAGTATGAGGCGGACAAGCAGGCCGAGCTGGCCTACAATGAGGAAGAGGATGGTGATGGTGGGGAGGAAGACGTCCAAGATGATGAAGACCGGGAGGCTCCAGGTGAAAGGGCCCTGGATTACGGAAAGCGACATCAAGCCATTGATGTGCTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_05771496_05786357.mRNA True 1482 mRNA 0.53 10 5771496 5786357

Neighbor

gene id symbol gene type direction distance location
CI01000026_05742174_05769229 FAM189A1 coding upstream 2126 5742174 ~ 5769370 (+)
CI01000026_05633305_05636501 FAM189A1 coding upstream 134558 5633305 ~ 5636938 (+)
CI01000026_05592701_05627231 TJP1A, TJP1 coding upstream 143566 5592701 ~ 5627930 (+)
CI01000026_05560160_05585916 NA coding upstream 185392 5559861 ~ 5586104 (+)
CI01000026_05499147_05532039 NA coding upstream 239176 5498793 ~ 5532320 (+)
CI01000026_05793556_05805041 CTDSPL2B coding downstream 7199 5793556 ~ 5805125 (+)
CI01000026_05809690_05817205 NA coding downstream 23333 5809690 ~ 5817473 (+)
CI01000026_05820062_05827011 NA coding downstream 33705 5820062 ~ 5827425 (+)
CI01000026_05828041_05831860 NA coding downstream 41684 5828041 ~ 5832009 (+)
CI01000026_06109467_06140429 MYBPC3 coding downstream 323110 6109467 ~ 6141599 (+)
G128525 NA non-coding upstream 269365 5501918 ~ 5502131 (+)
G128522 NA non-coding upstream 275204 5496009 ~ 5496292 (+)
G128521 NA non-coding upstream 277553 5493606 ~ 5493943 (+)
G128520 NA non-coding upstream 278507 5492664 ~ 5492989 (+)
G128514 NA non-coding upstream 292168 5479120 ~ 5479328 (+)
G128560 NA non-coding downstream 81899 5868256 ~ 5868582 (+)
G128561 NA non-coding downstream 82580 5868937 ~ 5869164 (+)
G128562 NA non-coding downstream 87126 5873483 ~ 5873730 (+)
G128563 NA non-coding downstream 95736 5882093 ~ 5882325 (+)
G128564 NA non-coding downstream 96223 5882580 ~ 5882878 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 1215179 4555776 ~ 4557613 (+)
G128137 NA other upstream 1340295 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 1439411 4327206 ~ 4332085 (+)
G127979 NA other upstream 2008510 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 3110667 2658605 ~ 2660829 (+)
G128585 NA other downstream 163456 5949813 ~ 5950122 (+)
G128601 NA other downstream 197522 5983879 ~ 5991761 (+)
G128757 NA other downstream 539839 6326196 ~ 6326785 (+)
G130552 NA other downstream 1308696 7095053 ~ 7096652 (+)
G130967 NA other downstream 2402017 8188374 ~ 8189073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033831 casc4 coding NC_007118.7 CM002891.2 31339129 ~ 31367917 (+)
bowfin (Amia calva) AMCG00007461 NA coding CM030123.1 CM030123.1 19108984 ~ 19127020 (-)