CI01000026_05793556_05805041 (CTDSPL2B)


Basic Information

Item Value
gene id CI01000026_05793556_05805041
gene name CTDSPL2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5793556 ~ 5805125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_05793556_05805041.mRNA
TCTTACATGTGACTCTTAACAAAATGAGGCTGAGAATGCGCAAGGCTTCTCAGCAGCCAAAACTCGCCCGCAGGCCCTGCCCGGCCCGGACCAAGCGAAAGCACTCTGAGATGGAGGAGTGCTCAGGTGAAAGCAAGGGTCTTCTGTCCAGCATCAAGAAGTTCATCCATGGAAGTTCCATCAAGGTGGAGCAGGACAGCCCAGCAAAGAGGAATCGTCTGAGCTGCGAGCTGATCACCTCCACCCCACAGAGAAACAATGACCTGCAACGGAAAAGCATCTACAGGGCACGTCGGAGAAGCTCCGTCAATGGTGAAACCACAAATCATGACACGAGTAAGCCTGTCAAGCCTAATGGCAAATTGGAGGACTCTGAGGAGGTTGTGAGCAGTCCACCCCGCACCACCCTGCTTGGAACCATCTTCTCTCCTGTCTTCAATTTCTTCTCACCAGCAAATAAAAATGCCTCGGATTCCCCAGGCCAGGCGGTGGAGGCGGAAGAGATTGTGAAGCAACTAGAAATGGAGCAAGTAGAAGAGATGCCCACCAGTGCTGCCACATCTAGAGAGCCCCTAAGTGTCCCTCTCTATACCAGTGCCATGCCATCTGCCTTCAGACCTCCACCCTCCACTCACACACCTGCGGAGGAGAGAGAGAACACCCCCCACTCTGACCTGCCTCCTCTTACAGCTCCTGGCTCTCCTGCAACAGTGGGGTATGTGGACACCTCTATTACTGTCCCAGCTGAAGGATCATATGAGGAGGAGTGGGAAGTGTTTGACCCGTATTTTTTCATCAAACATGTACCTCCGCTAACAGAAGAGCAGCTAACTCGCAAACCCGCACTCCCTCTGAAGACTCGCAGCACTCCCGAGTTTTCCCTGGTGCTTGACCTGGATGAAACCCTTGTCCATTGTAGCTTGAATGAGCTGGATGATGCAGCACTAACCTTCCCTGTCCTCTTCCAAGATGTCATATACCAGATCATTCTCTTCACTGCCTCCAAGAAAGTTTATGCAGACAAGTTGCTGAACATTCTCGATCCGAGGAAACAGCTGGTGCGGCACCGATTATTTCGTGAGCACTGTGTCTGTGTCCAAGGAAACTACATTAAGGATCTTAATATCCTCGGACGGGATCTGTCCAAGACTATAATTATCGATAACTCACCACAAGCCTTTGCTTATCAGCTCTCCAATGGGATCCCTATTGAGAGCTGGTTCATGGACAAGAATGACAACGAACTTCTGAAGCTGGTCCCTTTCTTGGAGAAACTGGTGGAATTGAATGAGGATGTGCGGCCACATGTCCGTGAACGGTTTCGGCTGCATGACCTCCTTCCTCCTGACTGAGCGCACATAGTGGGACAGGACAGTAAAAGACAACAAATGCAGATATACATTTTGCATTACAACATCATTGCCATTACTCTTCAA

Function

symbol description
ctdspl2b Predicted to enable phosphoprotein phosphatase activity. Orthologous to human CTDSPL2 (CTD small phosphatase like 2).

GO:      GO:0008969, GO:0016791, GO:0008330, GO:0052629, GO:0016312, GO:0052825, GO:0043812, GO:0043813, GO:0017161, GO:0052745, GO:0030487, GO:0052830, GO:0052831, GO:0016787, GO:0008138, GO:0017017, GO:0030351, GO:0030352, GO:1990003, GO:0052867, GO:0052829, GO:0052828, GO:0043726, GO:0004721, GO:0008579, GO:0019178, GO:0019198

KEGG:

id description
K17616 CTDSPL2; CTD small phosphatase-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_05793556_05805041.mRNA True 1436 mRNA 0.50 11 5793556 5805125

Neighbor

gene id symbol gene type direction distance location
CI01000026_05771496_05786357 CASC4 coding upstream 7199 5771496 ~ 5786357 (+)
CI01000026_05742174_05769229 FAM189A1 coding upstream 24186 5742174 ~ 5769370 (+)
CI01000026_05633305_05636501 FAM189A1 coding upstream 156618 5633305 ~ 5636938 (+)
CI01000026_05592701_05627231 TJP1A, TJP1 coding upstream 165626 5592701 ~ 5627930 (+)
CI01000026_05560160_05585916 NA coding upstream 207452 5559861 ~ 5586104 (+)
CI01000026_05809690_05817205 NA coding downstream 4565 5809690 ~ 5817473 (+)
CI01000026_05820062_05827011 NA coding downstream 14937 5820062 ~ 5827425 (+)
CI01000026_05828041_05831860 NA coding downstream 22916 5828041 ~ 5832009 (+)
CI01000026_06109467_06140429 MYBPC3 coding downstream 304342 6109467 ~ 6141599 (+)
CI01000026_06174460_06187224 NA coding downstream 368764 6173889 ~ 6187476 (+)
G128525 NA non-coding upstream 291425 5501918 ~ 5502131 (+)
G128522 NA non-coding upstream 297264 5496009 ~ 5496292 (+)
G128521 NA non-coding upstream 299613 5493606 ~ 5493943 (+)
G128520 NA non-coding upstream 300567 5492664 ~ 5492989 (+)
G128514 NA non-coding upstream 314228 5479120 ~ 5479328 (+)
G128560 NA non-coding downstream 63131 5868256 ~ 5868582 (+)
G128561 NA non-coding downstream 63812 5868937 ~ 5869164 (+)
G128562 NA non-coding downstream 68358 5873483 ~ 5873730 (+)
G128563 NA non-coding downstream 76968 5882093 ~ 5882325 (+)
G128564 NA non-coding downstream 77455 5882580 ~ 5882878 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 1237239 4555776 ~ 4557613 (+)
G128137 NA other upstream 1362355 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 1461471 4327206 ~ 4332085 (+)
G127979 NA other upstream 2030570 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 3132727 2658605 ~ 2660829 (+)
G128585 NA other downstream 144688 5949813 ~ 5950122 (+)
G128601 NA other downstream 178754 5983879 ~ 5991761 (+)
G128757 NA other downstream 521071 6326196 ~ 6326785 (+)
G130552 NA other downstream 1289928 7095053 ~ 7096652 (+)
G130967 NA other downstream 2383249 8188374 ~ 8189073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033832 ctdspl2b coding NC_007118.7 CM002891.2 31374383 ~ 31395511 (+)
bowfin (Amia calva) AMCG00007462 LOC106562148 coding CM030123.1 CM030123.1 19087202 ~ 19101380 (-)