CI01000026_06174460_06187224


Basic Information

Item Value
gene id CI01000026_06174460_06187224
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 6173889 ~ 6187476 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_06174460_06187224.mRNA
ATATAAATAAAACAATCCACGTCCATTATTGCAGCAAATGTAATCAAACTAACTATTAAACAGCTGAACAGAAAAAAGCTACTAGGATAAACAGCCTATTTGCCCTGGATAATAAACAAAAACAACTTTTTGGTTCTATTGACCTCTCTCAGAAATTCAATCAACATAATAACACCGTATCTTATTAATGAACGCGAGGATAGCGTTTCATGTTGCCGCTGCATGATCCAACACTTGATTACTTTTTCCTAACTCCTTTTATTATTTCAGACGCAGTCAGTACAAAACCTGCAGTAATCACTCTATTTCGCACAAAAACCTACCTTTACTGTCCAGTCGTAAAGGAGACCATTCAGCAGGACAGTGTCATCTGGGATGTTTTGGATAAGCCCTCCGCGTAACTATTTTGCGATATTCGCCCGCTCTTCGCCAAGCAGCAGCAGCTGCAAGTAGTCTCTTCAGCTTTTGAGCAAATAGATTAAATTATTGATAGTGGAAATTGCATGGTTGAGGTAATGGACTCCCATGACTGAGCGGATCCGTTGGAGTTGGGTTGAAGCAGTTGGATGGCATGGTGAGCGCTCGCGGTGTAGTGCGCATTGAGAGAGCTCTCCAGTTTGAAATGACGGCTTCATTCCTCGCGACTACAGTAACTAACTACTGCCGTGCCCGTGACGTTGCAACATGTGACTCCAGCGCGAGGGCGACCGAACGCCAACCCAGAGCACAAAAACAACATGGATCTCATTCAGAACTGCACATACAGCACAAAGTTGACACCACCACCACAGAAAGAACTAAGATAACCACAAAGTGGACATATGGACTAATGAGAATACAGCAAGAGATGAACTGGAAAGGGGTCTGGGCAGTGCTTTGTGTGACTCACATCATTGTCTCTCATCCCAGACCCAATCTGTACACTGAAGAATTGCGCAGTGCTCATCTCTCCAACGGCAAGATGCAACAGGTCCCTGTTATCAATAAAGAGCTGAGGGTGGTCAACAGCGGCCAGTCGTTTAACGCTGTGCACCAAGTGGAGCTTGCAAAGTACGCGTATACTACAGCAGCTCTACCATTTCAACTTTCACATGCTCTAAGTGGCGACAAAACTCCAAGCGCAAAGCAGCCCCACTATCGACTGGTTCTTTTCCTCGCGTGTTTGTTTGTTTGCTTTGCTTTTACCGGTCTCCCTCCGAAAGCGAAAAAGAAGAAGGAAAAAGTGAAACAATTCCCTAGCTTTGGCAAAAGAACTGCAAAACACAAAAGGCGATGTCCACTCACTCCGCATTTGTTTCTCTACCTACGAATCCCGGAAAACAGCAGCATTGCAAAGTTTTACATTTATGTTGATGAGGATCAACAATGCTGTCAGAACACATTAATGAGCAAGGATAATACTGAAGAAATTTTTTTGAAGAATGAATGGCTCAAGGTTGAAAACACTGTTACAGCCGCATCACTTCATCACTCCAGTCTTCCTTTCCTCTCCTCCGTTCTTTCCACGCTCCCACAGTTTTCACAGGCTCCCTGGATGACTCACATGCGGCCCTCTGCACCACCTCTGCCCTCCCCCGTAACTCCTAAACAGAGATACCCAAGACCTCAAACTATAGCTGCTTTTTGGTGCCATGCTCTACTGTTCAACTCTGACACAGACAACCTTTAGAATGCATAACATTCATATTCAGTGTTCATAAATACACATTGTTCACATAAACGGGAAAATTCATCAAGATGGGTTTGTATTCAGAGTAATTGGGGGATATGGAACAAATGTGGGCAGAACTGCGCAACATCATGTGTGAGGTAACATTTTAATGCGATGGTGCAGTAAACCTGACACCCCATTCAATTTTTTTTTCAAATTGTTCATACACTATTGCTTATATCTTATATTCACTTTATGTGCAGGCCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_06174460_06187224.mRNA True 1921 mRNA 0.44 8 6173889 6187476

Neighbor

gene id symbol gene type direction distance location
CI01000026_06109467_06140429 MYBPC3 coding upstream 32290 6109467 ~ 6141599 (+)
CI01000026_05828041_05831860 NA coding upstream 341880 5828041 ~ 5832009 (+)
CI01000026_05820062_05827011 NA coding upstream 346464 5820062 ~ 5827425 (+)
CI01000026_05809690_05817205 NA coding upstream 356416 5809690 ~ 5817473 (+)
CI01000026_05793556_05805041 CTDSPL2B coding upstream 368764 5793556 ~ 5805125 (+)
CI01000026_06234663_06316874 METTL15 coding downstream 47187 6234663 ~ 6316874 (+)
CI01000026_06332081_06337355 NA coding downstream 144263 6331739 ~ 6337396 (+)
CI01000026_06385815_06391975 NA coding downstream 198339 6385815 ~ 6392502 (+)
CI01000026_06422488_06426925 NA coding downstream 234937 6422413 ~ 6427191 (+)
CI01000026_06441927_06455849 NA coding downstream 254038 6441514 ~ 6455922 (+)
G128622 NA non-coding upstream 25034 6147867 ~ 6148855 (+)
G128619 NA non-coding upstream 87894 6048066 ~ 6085995 (+)
G128620 NA non-coding upstream 103589 6069209 ~ 6070300 (+)
G128654 NA non-coding upstream 121564 6051870 ~ 6052325 (+)
G128647 NA non-coding upstream 129573 6039340 ~ 6044316 (+)
G128708 NA non-coding downstream 11748 6199224 ~ 6199526 (+)
G130330 NA non-coding downstream 218246 6405722 ~ 6406100 (+)
G130343 NA non-coding downstream 232379 6419855 ~ 6420099 (+)
G130357 NA non-coding downstream 248871 6436347 ~ 6436657 (+)
G130390 NA non-coding downstream 294271 6481747 ~ 6482158 (+)
G128601 NA other upstream 182128 5983879 ~ 5991761 (+)
G128585 NA other upstream 223767 5949813 ~ 5950122 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 1617572 4555776 ~ 4557613 (+)
G128137 NA other upstream 1742688 4430562 ~ 4431201 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other upstream 1841804 4327206 ~ 4332085 (+)
G128757 NA other downstream 138720 6326196 ~ 6326785 (+)
G130552 NA other downstream 907577 7095053 ~ 7096652 (+)
G130967 NA other downstream 2000898 8188374 ~ 8189073 (+)
CI01000026_08297901_08307596 CTRB1 other downstream 2111097 8297857 ~ 8307629 (+)
G131077 NA other downstream 2313932 8501408 ~ 8506787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G21739 NA non-coding CM030123.1 CM030123.1 6519123 ~ 6519736 (-)