CI01000027_05781043_05784234 (KLHL38B)


Basic Information

Item Value
gene id CI01000027_05781043_05784234
gene name KLHL38B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5780606 ~ 5784415 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05781043_05784234.mRNA
GTTTAAAAACGGGGGTCAAGTACACAGCAAACTCTTAGAATAGCTTTTGGACCAAGTGGTGTTGTTTACAGCCTCAGTAAACATACACAAGTGAAGCATGGAGCAATTCAGACATGCTATGCAGACAGTGAAGAAACTTGTGTTATGGAAAAACAGAGGGGGTGAGGGCATACCACGAGGAGGTGTTAGCGGTACTAGCTCTAGTTCTGACAGAGAAGAGAGATTTCTATTTTTAGGGAGACTGGAATGTACACTGAGGCCTCTCGGAGGATTTCTGAACAACAAATAACATACCACGGTCGCCCCAGTCTCTATAAACATCCACCTGCCAAACTCAGAAAGTGAACAACTTTCAGAAGTGTTTTTGAAAACAGAGGGACAAGTTTGAGCTCTGCTTGAGTTTTGATGATACATAGATATTTACAGGACTATCTAGAATGTGCTTTAAATCAGCTGAGACAAGCTTAGATGGTCCAATATCAGAAGTCCTGCATTTTAAAGACAAAGACCTGATCTCCAGCCTCCTTCTGGAGCTGAACGCCTTGAGGAAGGACCAAATTCTCACTGATGTTGTTCTTTACTCTGAGGGCAAAGAGATCCCATGTCACCGCAATGTTCTGGTGTCCAGCAGCCCCTACTTCTACGCTATGTTCTGCAGCTGCTTCCTGGAGACCCAGAAGCCCCGGATAGACCTCAAAGGTGTTCCTTATGACATTCTTATGGGTATAGTAGAGTATGTTTACACAGGGTCCATCAGCATCACCATGGAGCAGGTTCTCCCTCTGATGCAAGCCGCATCTATGCTTCAGTATGGAAGACTTTTTGAGGCCTGCTCGACCTTCCTGCAGACCCAGCTCAGTCCGGACAACTGCCTGAGCATGATCCGGCTCTCTGAAATCCTGCATTGCTCTAGCTTGCAGGAAAAAGCGAGAGAACTGGCTGTCAAGAGCTTCTCCGATGTGGTGGTCTCCGAGGACTTCTGCGAACTCTCTCTACCCGAATTAGTGAGCTACTTGGAGGACGACAAACTGTGTGTTGAGGAGGAACAAGTATTTGAGACTCTTCTAGCTTGGATTCACCACGACCCATTCTCCAGACGTGGCACTATCCACGACTTGTTCCGTCGTGTGAGGCTGAGACACGTCCATCCTTCATATCTTTTCCAGTTTATTGCCAATGACCCTCTAGTCCAGTCGTCTTCATTATGCACAGAAATTATTGAATCCGTTCGTCGTCTTCTTTTTTCTGTTGGCACTCATTGCCCTGGTGATCTTGAGTCCCTTTGGGCAGTGCCACGACGGCAAAACTGCAAGGAGGCGCTTGTAGTAGTGGGAGGTCGTAAGAACGGTGAGCGGACATCTCGTGAGGCGCTTCTTTACGACGAGCAGACTCGCTGCTGGCAGTGTCTCGCAAAAATCCCGCTGCGCCTTTACCGGCCCTCTTATGTCTGCATGCACAGCATCCTTTATGTGCTCGGGGGCTTAACCATGAGAGCAGAAGGGCAGTGCACAGCTAGCAACAACGTGTACACGCTTTCTCTGAAAACAAACCAGTGGAGAACTGGAGAACCAATGCTGACGCCTCGATACGCCCATCAGAGCTCCACCTACCTGCATTTCATTTTTGTTCTGGGTGGATTGACGGCTGACGGACAGCTGTCCAATGAGGTAGAGCGATACGACACCATGTTCAACCAATGGGAGGTCATGGCCCCCATGCCCACTGCAGTTTTGCACCCAGCTGTAGCCGCACATGACCAGAGAATATACATCTTCGGAGGGGAAGACGCCATGCAGAAACCAGTTCGAATGATCCAGGTGTACCACATAGGAAGGAATCTTTGGTATAGGATGGAAAACAGGACGGTGAAGAACGTCTGTGCACCAGCTGCAGTGATCAATGATAAAATCTACATTGTAGGCGGCTATACAAGAAGGATGGTAGCCTATGATGTGAAAACCAACAGGTTTGAAAAATGTGAAAATATGAAGGCCAGGAAGATGCATCACTCTGCTGCTGTTGTGAATGACAAGATCTATGTCACGGGGGGCCGCTTCATTAACGGTCACGAGAGTGTGGAGGACTCGGACGACTTTGACTGCTATGACCCAAAGACAGACTCATGGGTGTCGATGGGAACTTTGCCATTCAAGCTATTTGACCATGGCTCAGTAAATCTGGTCTATCTCTCTGATAAGTTTTTGCCTACGTGAATGTATTAATGTGATAGTGTAGTTTATTCACATCATACAGGCTTAAATATGTCTCTCCAACCAAAATGGAGAGCATATTAAGATAGCAAAGCAATGAGAGACACACATTTTTCGAAGCTCTTTGTCAGTGTTTGCACACGTTGCTTTTTGAATGTGTGTGAGGTTATTAGTTAAATAACTA

Function

symbol description
klhl38b Orthologous to human KLHL38 (kelch like family member 38).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05781043_05784234.mRNA True 2394 mRNA 0.47 4 5780606 5784415

Neighbor

gene id symbol gene type direction distance location
CI01000027_05757143_05758496 NA coding upstream 21725 5756982 ~ 5758881 (+)
CI01000027_05740951_05748956 NA coding upstream 31650 5740951 ~ 5748956 (+)
CI01000027_05735304_05738483 ZNF576.2 coding upstream 41682 5735127 ~ 5738924 (+)
CI01000027_05724339_05733809 NA coding upstream 46747 5723434 ~ 5733859 (+)
CI01000027_05719979_05720814 NA coding upstream 59272 5719903 ~ 5721334 (+)
CI01000027_05789308_05795504 FBXO32 coding downstream 4741 5789156 ~ 5796059 (+)
CI01000027_05805062_05805690 NA coding downstream 20647 5805062 ~ 5806023 (+)
CI01000027_05807381_05817636 TBC1D31 coding downstream 22614 5807029 ~ 5817665 (+)
CI01000027_05820700_05833750 DYNC1I1 coding downstream 36052 5820467 ~ 5834241 (+)
CI01000027_05836494_05847115 NA coding downstream 52079 5836494 ~ 5847601 (+)
G140894 NA non-coding upstream 27231 5750231 ~ 5753375 (+)
G140858 NA non-coding upstream 99147 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 170428 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 172491 5602529 ~ 5608115 (+)
G140929 NA non-coding upstream 212953 5566567 ~ 5567653 (+)
G140950 NA non-coding downstream 37395 5821810 ~ 5822331 (+)
G140869 NA non-coding downstream 122381 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 173874 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 229274 6013689 ~ 6017411 (+)
G140889 NA non-coding downstream 381345 6165760 ~ 6170544 (+)
G140862 NA other upstream 59841 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 707470 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 709738 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 724667 5050310 ~ 5055755 (+)
G140924 NA other downstream 178791 5963206 ~ 5965326 (+)
G141052 NA other downstream 486952 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 921962 6705983 ~ 6708513 (+)
G141082 NA other downstream 1113996 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 1168531 6951132 ~ 6957767 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009932 klhl38b coding NC_007127.7 CM002900.2 25245857 ~ 25250414 (+)