CI01000027_08340304_08385380 (SEMA6E, SEMA6C)


Basic Information

Item Value
gene id CI01000027_08340304_08385380
gene name SEMA6E, SEMA6C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8340304 ~ 8385380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_08340304_08385380.mRNA
GAAGACACCTACCTGTACCCCAGTTTCCAGGGGAACATGTCAGATAACGACACTGCCAGACTGGGGTTGGATTTTCAGAGGATGCTGCGGATTAACCACATGGTCTACATTGCTGCAAGAGATCACGTTTTTGCCATTAACCTCAGCGCTTCAGTGGAGCGAATCGTCCCCCAACAGAAACTGACATGGAAGACAAAAGATGTGGAGAAATGCACAGTCAGGGGGAAAAACAGCGATGAGTGTTACAACTACATCAAAGTGCTGGTGCCACGTAACGACGAAACTCTCTTTGCATGTGGAACCAATGCGTTCAACCCCACCTGTCGCAACTACAAGATGTCATCTCTGGAGCAGGATGGGGAGGAGGTGGTCGGTCAAGCCCGTTGCCCTTTCGAATCCCGCCAGTCTAACGTTGGCCTGTTTGCCGGCGGTGACTTTTATTCAGCCACAATGACGGATTTTCTAGCAAGTGATGCAGTGATTTACCGAAGTTTAGGAGAAAGCAGTCCTGTCCTGCGTACTGTAAAATACGACTCAAAATGGCTACGAGAGCCTCATTTCCTTCATGCCATTGAGTACGGGAACTACGTCTACTTCTTTCTCAGTGAGATTGCAGTAGAGTACACCACCCTTGGCAAGGTGGTGTTCTCTCGAGTCGCTCGCGTGTGTAAGAATGATAACGGCGGTTCTCCGCGGGTTCTAGAGCGCTACTGGACTTCTTTCCTGAAAGCCCGGTTGAACTGTTCAGTTCCAGGTGATTCGTTCTTCTACTTTGACGTTCTTCAGTCATTAACCAACGTCATGCAGATCAACCACAGGCCTGCGGTGCTAGGCGTCTTTACCACTCAAGCCAACAGCATCACTGGTTCTGCTGTATGTGCATTCTACATGGATGACATAGAGAAAGTTTTTAATGGAAAGTTTAAGGAGCAGCGAAACAGCGAGTCAGCCTGGACACCAGTTCCTGATGAAATGGTGCCCAAACCCCGGCCAGGATCTTGTGCTGGTGATGGCCCTGCTGCTGGTTATAAGTCCTCCACAAATTTCCCTGATGAAACTCTTACATTCATTAAGTCTTATCCACTTATGGACGAGGCCGTTCCGTCTGTCAACAACCGACCCTGCTTCACACGAACCACCAGCAGGTTCAAGCTGACCCAGATCGCGGTGGACACGGCAGCTGGCCCGTATAAGAACTACACCGTTCTGTTTCTGGGTTCAGAGAATGGACGAGTCCTGAAGATTCTCGCCAGCACGCACCAAAACTCCACCTACAGCACGCAGGTTTTGGAAGACATTGATGTTTATAACCCCAACAAATGTAATGTGCGTGGTGAGGACCGGAGGATACTGGGATTGGAGTTGGACAAGGACCATCACGCCCTGTTTGTGGCATTCTCAAGTTGCGTGATCCGTGTTCCACTCAGTCGCTGTTCTGACTACGGCAACTGCAAAAAGAGCTGTCTGTCCTCGCGAGACCCCTACTGCATCTGGCTGAGTGCGGGGAACTGTGCCACAGTGGCGCCGGGATTCAAGTCTGGATTTGAACAGTATGTGGAGAGTGGATATCCTCAGTACCCAGACAGCTGTCATGATGTGTTGGCCACAACTCGCAAGCAGAACCCTGCGGTGGACTCTGCGTACGGAAAGACCTCACCCACAAGCGCCAGCACAACCAATCAGGGGCCAGCTCTGCCTAAAGTCAAGGGTGTCTCTGAGACAGGTACCCACCCCGAGGAGGGGAGGCGGGGAGGGCAGGGTTCTCCTGACTTGGAGCCAGGCAGTGTGGAGATGGAGGGAGTGCGCCGACCCCCTGAGGTAGATAAGTCCAACCACAGTGTTCACTACACTCTGCTCATTGCGTGTGTCCTGGTGGCGTTTGTCCTGGGAGCTTTCCTCTCCGGATTCCTCGTTTCCTGTTACTGCAACCACAACGTTAACAAGACCAAGAGGCTGTCGAAAGATCCAGAAGCACCGATCCCACATGCTCTATCCCTGCGCAGCCTAGCCAAGCTAAACGGCTTGCTAGAGAGCCAAAGCAAGGATGACAAGCTGGAGGTATCCTCACCCAAACTCTACAACTCTTTCTTTGCTAATGGAAAAGAGCAGGCGCATCGCAGGAATGCCCACCATGCTGCCATGACAGAGCTCATTCACCCACATCATCACCACTCTGCTGAGCTCTCCGGCCTTCCCACTCCTGATTCGACGCCAGAGCTCCCAATCAAGAGTATGAAGGCCTTTAAGAACCAATGGGAGAAGAATCAAAACTGCAATAATGCTAAAGAACCCAAGTCCCATAACATGGGAGCATCTCGGCCGACCACTGGGATGCAGCATCAGATTTTCCCCTTCTCCCAAGGACTGACCAACGGACAGGTACTAGGCGGCTCGGCACACATGGAGGAACGCAAAGTCCACAACGCAGAGCGTGTGGTAAGCCAGCCGTATCACTGCTACCCTCACAAGATTGTGGACGTCACTTCGCTCGACGAGCTTCTGAAACACATTCACGAAATCAACGTGGCCACGGGCAAGAGTCCCACTGTACTCACCTCTTCCATGTCAGCTAACGCCGGTCAGATGGCGTTCGCGAATCGCGTACAGCCACAGATCCCAGAAACAGAGTCTGCGCCGTACTACAGTTCCTCCACGCTTCCACGGGACAGTCTCACTCGCCGCATGGACGTCCCACCGGAGATTCCTCCCCATCATCAGTCCACCCTGGAGAGAGTGTCCCGTCACCCGTCACAACGGCACTCTTTGATAACCACCCCCAAGATGCCCAGCGGGGGCGTGGTGCCACGGCAGCACAGCTTCAACCAGCGCAGCCCTCATCAGCCCCTCCTGCTCTCCCGAATGAACTCTAACGGCAGCAGTTCAGGTTGTGATGTACGGCACCCGCTCATCCCTAACGGATACCTAACTCGCCAGCATAGCTACAGCGAGCAGCCGGAAGTCCACCGTGGAGCTATTGTCCGTCGGACAGCTTCGCTCAAGCCTGACGTCCCACCCAAACCACTGTTCATCCCTGCTAGCTCGCCTGTCAACCAGGCAGGGAAGTTCAACTAC

Function

symbol description
sema6e Enables chemorepellent activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; lens; and solid lens vesicle. Orthologous to human SEMA6C (semaphorin 6C).
sema6c Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Involved in negative regulation of axon extension. Located in cell surface and cytoplasm.

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_08340304_08385380.mRNA True 3072 mRNA 0.53 17 8340304 8385380

Neighbor

gene id symbol gene type direction distance location
CI01000027_08276000_08284306 NA coding upstream 55776 8275799 ~ 8292755 (+)
CI01000027_08255251_08264629 NA coding upstream 75407 8255073 ~ 8264897 (+)
CI01000027_08078236_08079316 LYSMD1 coding upstream 260354 8078236 ~ 8079950 (+)
CI01000027_08064283_08072145 TMOD4 coding upstream 268055 8061684 ~ 8072249 (+)
CI01000027_08052743_08058881 VPS72 coding upstream 281197 8052678 ~ 8059107 (+)
CI01000027_08389687_08404869 NA coding downstream 4142 8389522 ~ 8406117 (+)
CI01000027_08412094_08418277 TMEM79B coding downstream 24783 8410163 ~ 8418633 (+)
CI01000027_08457984_08480177 PEAR1 coding downstream 71733 8457113 ~ 8480827 (+)
CI01000027_08509097_08512799 MC2R coding downstream 123717 8509097 ~ 8514407 (+)
CI01000027_08530476_08532249 FAM210AB coding downstream 143104 8528484 ~ 8532996 (+)
G142661 NA non-coding upstream 116909 8223184 ~ 8223395 (+)
G142660 NA non-coding upstream 117156 8222597 ~ 8223148 (+)
G142651 NA non-coding upstream 127884 8212200 ~ 8212420 (+)
G142625 NA non-coding upstream 152163 8186844 ~ 8188141 (+)
G142668 NA non-coding downstream 12146 8397526 ~ 8397784 (+)
G142694 NA non-coding downstream 165811 8551191 ~ 8559581 (+)
G142720 NA non-coding downstream 220977 8606357 ~ 8606629 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 308263 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 388362 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 868590 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1382537 6951132 ~ 6957767 (+)
G143033 NA other downstream 1343435 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010020 sema6e coding NC_007127.7 CM002900.2 30002605 ~ 30271444 (+)
bowfin (Amia calva) AMCG00012462 NA coding CM030138.1 CM030138.1 18615913 ~ 18651892 (-)