CI01000027_08078236_08079316 (LYSMD1)


Basic Information

Item Value
gene id CI01000027_08078236_08079316
gene name LYSMD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8078236 ~ 8079950 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_08078236_08079316.mRNA
ATGTCCGCGGATCACTCAGCGACGCAGACCGGGACTCACGGCCTCCTCCGCGGCCAGCGCACCCGGTCCTACGGCAGCCTGGTGTCCTCTTCATTATCACCCGTGAGAGAAAGACGAATTCAACACAAAGTTCAGCCCGGTGAAACTTTGCAAGGACTATCACTGAAGTACGGCGTGTCTATGGAGCAAATCAAAAGGGCAAACAGACTGTACACAAATGATTCAATATTCCTGAAGGAGTCCCTTTTCATCCCTGTGCTGACAGAGTCTGTGTCTTTCACAAATGGAGTGGAATTGACAGAGGAGGAGTCAAGTCCAGCACAAACACACACAGAGATTTCTAATGAGACTCCCAAAAGCCAAACAGACTCTAGTAGATGTGAAGCGAATGCTGATCTGTCACCGGTGGAGTACCTGAAAAAAATAGACAGCTTGATCAGTAAGTCAAAACAAGCAGCTGTGAAAACCTGCCAGGAGGGAGAGAAACAGTTCTCTTCTATGGATCTACTCCATCACAGCAATCTGAAGTCTGACACAGTATCCTCCCAGCAGGCCGTATTGGGAGGTGTTCCCATTACCATCACCAGACGGACCAAGAATTTGAGGGATAGGGAGGACGAAATCTTCCAGCTCTGATGTAGGCGTTTATTCTGGTGTAGGATTCTTCTGACTGTTTTCTGTTTTATTTGTACAAGTGGAATGATTTAGAGGGCTCCCTCTTCTGGTTTCATGCCTTTAAATTGTGATGGGGAGTGTTGGAGAGATTTGCAATAGTCCTGTTTTTATAAAGGTGTTACCAGCTTTAGACATGCACACATATTAGCACTGTAAAAACATTAGCCTGATGCCTAAAAGTAATAATATAATGTGAATTATAATTCTGCTGTAACCAAAGTAATGGGAGACAGTTTTAGGTTTGATGTGGACAACTGCATTTGAGCAAAAGAAATCAGGAATGTAGCTTGTAAAAATAGTGCACTTGCTAATTAATATTTAACACTACCTCACAAATAATGGATAGAAGTACTTTAGTTTTAGGAAATTGAAAAAGTATTTGGGAATGTGCCATTGGACATCTGCATCTTTCAATGCATAGTTTTGCACTGCAGTCTCGTGCTTGGTTTTGTGTGTGTTTTTTTTTCCTGATTGCTTTATAATGTTTTCCTAACATGATAAAGAACCTTTGTTCTTTTCCTGGACGGGTTTGTGATTTGCATCAGTGATTTGTGAACGTAACACCCCACAGCAAAATAATGTAATATGAAACAGA

Function

symbol description
lysmd1 Is expressed in central nervous system. Orthologous to human LYSMD1 (LysM domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_08078236_08079316.mRNA True 1270 mRNA 0.42 3 8078236 8079950

Neighbor

gene id symbol gene type direction distance location
CI01000027_08064283_08072145 TMOD4 coding upstream 5987 8061684 ~ 8072249 (+)
CI01000027_08052743_08058881 VPS72 coding upstream 19129 8052678 ~ 8059107 (+)
CI01000027_08033124_08037571 NA coding upstream 39002 8032971 ~ 8039234 (+)
CI01000027_08026500_08029412 ENSAB, ENSA coding upstream 48805 8025788 ~ 8032041 (+)
CI01000027_07981813_07992141 NA coding upstream 85964 7981637 ~ 7992272 (+)
CI01000027_08255251_08264629 NA coding downstream 175123 8255073 ~ 8264897 (+)
CI01000027_08276000_08284306 NA coding downstream 195849 8275799 ~ 8292755 (+)
CI01000027_08340304_08385380 SEMA6E, SEMA6C coding downstream 260354 8340304 ~ 8385380 (+)
CI01000027_08389687_08404869 NA coding downstream 309572 8389522 ~ 8406117 (+)
CI01000027_08412094_08418277 TMEM79B coding downstream 330213 8410163 ~ 8418633 (+)
G142518 NA non-coding upstream 27656 8046244 ~ 8050580 (+)
G142559 NA non-coding upstream 55977 8021941 ~ 8022259 (+)
G142557 NA non-coding upstream 60567 8017440 ~ 8017669 (+)
G142556 NA non-coding upstream 61238 8016770 ~ 8016998 (+)
G142516 NA non-coding upstream 71976 8003190 ~ 8006260 (+)
G142580 NA non-coding downstream 51429 8131379 ~ 8131664 (+)
G142594 NA non-coding downstream 69875 8149825 ~ 8150579 (+)
G142610 NA non-coding downstream 88395 8168345 ~ 8168569 (+)
G142617 NA non-coding downstream 99120 8179070 ~ 8179281 (+)
G142625 NA non-coding downstream 106894 8186844 ~ 8188141 (+)
CI01000027_07947743_07951397 NA other upstream 126294 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 606522 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1120469 6951132 ~ 6957767 (+)
G141082 NA other upstream 1177313 6898411 ~ 6900923 (+)
G143033 NA other downstream 1648865 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010017 lysmd1 coding NC_007127.7 CM002900.2 29690708 ~ 29696789 (+)