G142580


Basic Information

Item Value
gene id G142580
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8131379 ~ 8131664 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162020
AAACACCAAAAATAAAATCTACATAAGTTAAGATTACATGATAATTTTAAGTTTAATGCATAAATTTACTTACTCAAAAATTTAAAGTTAAGAGCAATTAAAATGTAGGAGTACAAAATTGGTATCTGCCAGTTCTGCTTACTTAAACTTTGAATTTCTTAACTTAAAAAAAATGATGTAACTGATTACCTCAATTTTTTTGAGTTTTGCCAACTTATTTAGGTTTACAGTGTTGACTTCCAAAATCATTTTTAGTCCATACAATGGAAGACAATGAGACCCGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162020 True 286 lncRNA 0.27 1 8131379 8131664

Neighbor

gene id symbol gene type direction distance location
CI01000027_08078236_08079316 LYSMD1 coding upstream 51429 8078236 ~ 8079950 (+)
CI01000027_08064283_08072145 TMOD4 coding upstream 59130 8061684 ~ 8072249 (+)
CI01000027_08052743_08058881 VPS72 coding upstream 72272 8052678 ~ 8059107 (+)
CI01000027_08033124_08037571 NA coding upstream 92145 8032971 ~ 8039234 (+)
CI01000027_08026500_08029412 ENSAB, ENSA coding upstream 101948 8025788 ~ 8032041 (+)
CI01000027_08255251_08264629 NA coding downstream 123409 8255073 ~ 8264897 (+)
CI01000027_08276000_08284306 NA coding downstream 144135 8275799 ~ 8292755 (+)
CI01000027_08340304_08385380 SEMA6E, SEMA6C coding downstream 208640 8340304 ~ 8385380 (+)
CI01000027_08389687_08404869 NA coding downstream 257858 8389522 ~ 8406117 (+)
CI01000027_08412094_08418277 TMEM79B coding downstream 278499 8410163 ~ 8418633 (+)
G142518 NA non-coding upstream 80799 8046244 ~ 8050580 (+)
G142559 NA non-coding upstream 109120 8021941 ~ 8022259 (+)
G142557 NA non-coding upstream 113710 8017440 ~ 8017669 (+)
G142556 NA non-coding upstream 114381 8016770 ~ 8016998 (+)
G142516 NA non-coding upstream 125119 8003190 ~ 8006260 (+)
G142594 NA non-coding downstream 18161 8149825 ~ 8150579 (+)
G142610 NA non-coding downstream 36681 8168345 ~ 8168569 (+)
G142617 NA non-coding downstream 47406 8179070 ~ 8179281 (+)
G142625 NA non-coding downstream 55180 8186844 ~ 8188141 (+)
G142651 NA non-coding downstream 80536 8212200 ~ 8212420 (+)
CI01000027_07947743_07951397 NA other upstream 179437 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 659665 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1173612 6951132 ~ 6957767 (+)
G141082 NA other upstream 1230456 6898411 ~ 6900923 (+)
G143033 NA other downstream 1597151 9728815 ~ 9729551 (+)

Expression


Co-expression Network