G142625


Basic Information

Item Value
gene id G142625
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8186844 ~ 8188141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162065
ACACATTATGATTTTGTGCCACATTTTGGTTTGTAACTTCGCAAAACATTAGTAAACCCTAGAAGATTGCATATCTTTATTTAGAGCAGGTGGCTAGCCTACCTAATCCATTGCATAGCTTGAAGACATTTAGAATACATAACTATGGTGTACTCGCTTCATTTTTCCTTGTTTGTTTGCTGCACTTGTTAAGGTGCGGTCACATTACACTTAAAATTGAAGGTTCTTTATTGGCATCTATGTATCCATGAAGAACAAATCCAGCCCCACAACCGACTTCATTGTTCAAGTCAATCATACCAGTTACCTGTCAAGTAAAGGTACGACAATGTTTTAACGCTTAACTGGTTTGGGAGAAAATCATGGATTCTAGACAGTAGTAAATCTTTCTGTAAGTTATATCGTTACACCATTAGGTGGTGAAAAGTGATGAATCAAATTTATGAGTGAGTTATAGATGGGTTTCCGTGCAACGTCATCACAGAGATGCGCATGCAACTAGGGGGCAGAAAGCAATGTTTCACCATTACTGAGACTTAATTTCTTAATATAATCGGCGGAGTCCGTGCTACCTAGGCTTCCAAAGTAATTGATGCTAGCCATTTCCTCACTGTCACACACCTAGCTGTCACAAGTCTCATGTCTTGTACAGTATGTTTACAGTATCAAATTTCTTTCAAATGTGGCGGGTCGTGTGTATAGCCTTGTTGTAAACATTTAGGATAGAAAGGCTCAACAACCAACAAAACCAGGTAAGTTCATAGGGTATGTCAGGTTTTTATGATTAGCAAACTTAGTTGGACAATTTCATTCGAGACCTGATGACTAACATTATAGCCAGCTAACGCTTTACATCATGTTATATTGATATGCAAATGAAACAAACGATCCAACTCTGAAATGGCAGTTTATTATTGAGTCAACAAGAATTTACAAACTATGCGAAATCTACGTTAATTACAATGGTAGATTAACGTTACAATCTTCTACAGGTGTTATGTCGAGTTCTGCTTAATGTTACATGCCAAGAATTGCATGCACCTCCAAGTACTGTTTAAAAATGATATAATATTCTTTGTGGGGTTCATTAATGGTGATAAATAATTCGGCAGAACAGATGTTGTAGGCTACCTGCAGAGATTTGCATCCACCTCTTTTCTCAGCATAAATGACTGTTACCTCCTGTGAGGTGCATGCAGAACTCGCTATAACGGGACGTTCTAAAACGTTTAACGTGAAAATGCTCAACGTGAAAATGCTTAACGTGACTTAATGTACTAAGACAGTGACATTAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162065 True 1298 lncRNA 0.38 1 8186844 8188141

Neighbor

gene id symbol gene type direction distance location
CI01000027_08078236_08079316 LYSMD1 coding upstream 106894 8078236 ~ 8079950 (+)
CI01000027_08064283_08072145 TMOD4 coding upstream 114595 8061684 ~ 8072249 (+)
CI01000027_08052743_08058881 VPS72 coding upstream 127737 8052678 ~ 8059107 (+)
CI01000027_08033124_08037571 NA coding upstream 147610 8032971 ~ 8039234 (+)
CI01000027_08026500_08029412 ENSAB, ENSA coding upstream 157413 8025788 ~ 8032041 (+)
CI01000027_08255251_08264629 NA coding downstream 66932 8255073 ~ 8264897 (+)
CI01000027_08276000_08284306 NA coding downstream 87658 8275799 ~ 8292755 (+)
CI01000027_08340304_08385380 SEMA6E, SEMA6C coding downstream 152163 8340304 ~ 8385380 (+)
CI01000027_08389687_08404869 NA coding downstream 201381 8389522 ~ 8406117 (+)
CI01000027_08412094_08418277 TMEM79B coding downstream 222022 8410163 ~ 8418633 (+)
G142617 NA non-coding upstream 7563 8179070 ~ 8179281 (+)
G142610 NA non-coding upstream 18275 8168345 ~ 8168569 (+)
G142594 NA non-coding upstream 36265 8149825 ~ 8150579 (+)
G142580 NA non-coding upstream 55180 8131379 ~ 8131664 (+)
G142518 NA non-coding upstream 136264 8046244 ~ 8050580 (+)
G142651 NA non-coding downstream 24059 8212200 ~ 8212420 (+)
G142660 NA non-coding downstream 34456 8222597 ~ 8223148 (+)
G142661 NA non-coding downstream 35043 8223184 ~ 8223395 (+)
G142668 NA non-coding downstream 209385 8397526 ~ 8397784 (+)
CI01000027_07947743_07951397 NA other upstream 234902 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 715130 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1229077 6951132 ~ 6957767 (+)
G141082 NA other upstream 1285921 6898411 ~ 6900923 (+)
G143033 NA other downstream 1540674 9728815 ~ 9729551 (+)

Expression


Co-expression Network