CI01000027_08064283_08072145 (TMOD4)


Basic Information

Item Value
gene id CI01000027_08064283_08072145
gene name TMOD4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8061684 ~ 8072249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_08064283_08072145.mRNA
ATTTAAAAGACCCTCTTCACAACTAGCGAGCATGAACAGGTGAAACTCCGCTAATATTTTTTAGGCTTGAGTTGGTGTCACTTAAGAGCTGTGAGAACAGGTGCGCAGAACAGGCAGACAGCCGTTTTTTTTCTGGGACATGCGCACACAACACAAAAAAAATGACACCTGGTCAGCAGAAGGCCCGCTGTATGTTTATTGTAAGACCGAAGAGACAATAGTTAATAGCTATTTATAATCCCTGATGTGTCAATCTTGTAGACTGACAGGTTCCTGAAAGACTGGTGTCAGATGCATTGTCCATTTCTGAGGGAAAGATCATTTAGAAGATAGTTAATGTCATTAACCTTTGTTTAAAGCTGAGATTGCACAATTAAACTTAAGTTAGTTAGATATATATATAAAATAGCTATTTTTTTCTGCTAAGGATTAATAATTATTCTTAAAATGAGATGAGAACTGTGAATTTTGTGATGTAATGAATCAGTAAACTTGCACCACATGCACATGTGGTGGATTGATTGATGTCTACAATATTTAGTTTTTATTTTCTGTTCTTAGCTCTCTGATCCTGTATTTGTGTCACTGGCTTTACAAATTAGAGCCATGCTACTCTGGTCTAACACCTCTGATAGACAGATAACCACAAATACACACCCAAAACAAAGACAAAAACACATTTTTAGATTCTTCCTATTATATAACATTAGCCATGGCTAACTCTAATAATCTGCTTATTATTTTATTTTATTATATTTAGTTGAATTATGTAGCAAGTATCAGTTCATGAAAGTGTGGAACATAACAGATCTGTGTGATTCATTGTGTGAAATTTAGCAGTAATGTTTATTAGTATATATTTATACACCATGACCTCACTGGTCTCCAAATGATTTTACCACATGATTGTAAACATTGATCGCCCATCTTAAAAAAAAGTAATTTGATTAAAATTATTTACATATCAAAAGCATTTAAAAGATTACAAATGAAACATTTTGGAGAGCTTTAGCTTTGTGTTATGCAAAGCCATCTCAGTTCGAATACAAGAATACAACTCATACCGCAGCCTTTAAAGTTATATAAAATCATTCAGAATCAGACAGTATTCTTGTCTATTTTTTCTGTGTAAAAATATCTAAACATTCTTTAAACAAAACAAAACCCCTAGATCATTTTACTTGAGAAACAAAATTACATAATATATTAAGACCTGTTTTCAGTTTTCCATTTGTGACCATGGACCATGAAACTAGCCATAAGGGTCATTTTTTTTAAATTGAATAAATCTGAATAAATTGAATAAAGCTGAATAAATAAGCTTTCAATTGATGTATGGTTTGTTAGGATAGGATAATATTTGGTCGACATACAACTATTTGAAAATCTGGAATCTGAAGGTGCAAAAAAATAAAAATATTGAGAAAATCACCTTTAAAGTTGTCCAAATGAAGTCCTTAGCACTGCATATCCACTCACAAAAATACATTTTTTATATATTTATGGAAGGAAATTTACAAAATAGTTTCATGGAACATGATCTTTACTTAATATCCTAATAATTTTTGGCATAAAAGAAAAATCGAAGATTTTGACCCATACAATGTATTGTTGGCTATTGCTACAAATATACCTGTGCGACTTATGACTGGTTTTGTGGTCCAGGGTCACATTTTTTATGCATAAATCTAACATAATGCTGTGAGGTTATGCTTAAAACAATATGCCAAATGTTATATTAAGAATGTTTTGGTATTTAATCAGAAAATAAAATAAAAATGTAAGAAAATACTAATTTTTGCTGTGTGAGTATTTCAAACATGTTAAGACTAATCTGTGGATACAGACTGGTGAGTCGAGATCTGTTACATGTTAGGCTTTATTGTCTGTAGTTTGTGTTGCAGATCTAGTTTGGGTGTGGTGGTCTGAAACTGTTGACTAGCCCATGACTCTATCAGCCTGTTTCACAGGCGGGCAGGCGGCAGCATGGGCCACCTTCACATGAGTGTGAGCCAGTGATAACTCCTCACAGTTCTAACCTTCTCCTTTTTACTGTAATCCAAAACCCAAGCGTTACTGTTCAGAGACTAAAAATAGACAAGATTCTCTCTGTCTCTGTGCCTTGGAATCAAAGAAGCAGTGAGTTCTTTCCTCATGTCCCATATGATTCTCTAATAATTAAATGGTGTGTTGTCAGAAAGGCATATCTCTGTTCCCAAGTACACTGTACCCTCAGACCCCCAAACGCTCTTCCTGTACACAAATGCTAGCCTTGTTCTTTTAATTCAGCTGGGTTTTGTGGCATTTAACAATGTAAGCTGTTTCCTATCTATCATGGACTTTCAGTGGCTGGCTCTTTTGGCCAGGCTAAAAGTGACTTGGACTGGAAATCAGGTTTTCCCATTCATTCTCAACTTGTACAGAAAGCTTTGAGGGACTGAATAAAGCAAGCAGCTATTATTGTGCCTTATTTGCAAGCCAAATATAGTAAAACTACTTGTATTTTGTGCAAGTTTCGTGCTTAAACTTTTATCTCTCTCTCAGGGCCCGCTGTCTCTGGGCGAGCTGTGTGAATTGAGAGTACCAACAAGCAGCAAGCATGTCTAAGAGTGATCCCCGAGACATTGACGAGGATGCCATCCTCAGGGGCCTTAGTGCCGAGGAGCTGGAGAAGCTGGAGTATGAACTACAGGAGATGGACCCTGAGAACGCCATGCTCCCAGCCGGCTTCCGCCAGCGTGACCAGACCAAGAAAAGTCCCACAGGCCCCTTCGATCGCTTCGCCCTGATGGATTACCTGGAGAAGCAGGCCATGGAACACAAGGACAGAGATGATCTGGTACCCTTTACAGGGGAGAAGAGAGGTAAAGCCTTTGTCCCTAAACCAGGGTCAGGACAAATCCCTGTGCAGGAGCAGATCACTCTGGAACCTGAGCTGGAGGAAGCACTGAGGAATGCAACAGATGCTGAAATGTGTGACATTGCAGCTATCCTGGGGATGTACACGCTCATGAGCAACAAGCAATATTATGATGCCCTGAACACCACTGGCAAGATTGCAAACACAGAAGGCATCAACAGTGTGGTGAAACCAGATGTGTATAAGATCTATCCTGACGAGCCTCCCAATGACACAGATGTGGAGGACACTCTCCGTTGCCTCCAGAAAAATGATAGCAGGCTGACGGAGGTCAACCTCAACAACATCCCGGACATTCCCATCTCAACCCTGAAAGAGATTTTTGAGGCTATGAAGCACAACACACACGTGCTAAGCCTCAGCATCGCTGGGACACGCAGTAATGACCCCGTGGCCTTTGCTGTAGCTGAGATGTTACAGTCCAACACCACCCTGCAGAGCCTCAACATTGAGTCCAACTTCATTACTGCACAAGGCATGATGGCCATCATCAAGGCACTGGAAGAGAACTCCACCCTGACCGAGATTAAGATTGACAACCAAAGACAGAAACTGGGTGACTCAGTTGAGATGGAGATTGCATCCATGTTGGAGAACAACCCCAGCATCATAAAGATTGGTTATCACTTCACTCAGCAGGGCCCACGTGCAAGAGCCGCCATGGCCATCACCAGAAACAATGATATCCCTGAAACAGGATCATTTTTATTCATTATTGTTGCTACATTGAATTTGATATTTTTGTATATTTACCCCATATCCAGTTCGTCAGCAGAGAGTAAGATGAAAAGAAGATGGAGTTTAGTTCATCTAGGAGGTATCAAAGTTCTCCATGTGCACTCTTGGAGTGCTACAGACACTCCAGCAACAGCCATGACAACATGACAGCTTTTACCCTTCACCATCGGCCATTGTGGATATCATTATCGCCACCTTGATAAGACTTCATTGCTTTTTGTGGATTTCATCAACTTAAAAGCTCTGATCTA

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

GO:

id name namespace
GO:0007015 actin filament organization biological_process

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_08064283_08072145.mRNA True 3909 mRNA 0.39 9 8061684 8072249

Neighbor

gene id symbol gene type direction distance location
CI01000027_08052743_08058881 VPS72 coding upstream 2577 8052678 ~ 8059107 (+)
CI01000027_08033124_08037571 NA coding upstream 22450 8032971 ~ 8039234 (+)
CI01000027_08026500_08029412 ENSAB, ENSA coding upstream 32253 8025788 ~ 8032041 (+)
CI01000027_07981813_07992141 NA coding upstream 69412 7981637 ~ 7992272 (+)
CI01000027_07973865_07979402 NA coding upstream 82221 7973695 ~ 7979463 (+)
CI01000027_08078236_08079316 LYSMD1 coding downstream 5987 8078236 ~ 8079950 (+)
CI01000027_08255251_08264629 NA coding downstream 182824 8255073 ~ 8264897 (+)
CI01000027_08276000_08284306 NA coding downstream 203550 8275799 ~ 8292755 (+)
CI01000027_08340304_08385380 SEMA6E, SEMA6C coding downstream 268055 8340304 ~ 8385380 (+)
CI01000027_08389687_08404869 NA coding downstream 317273 8389522 ~ 8406117 (+)
G142518 NA non-coding upstream 11104 8046244 ~ 8050580 (+)
G142559 NA non-coding upstream 39425 8021941 ~ 8022259 (+)
G142557 NA non-coding upstream 44015 8017440 ~ 8017669 (+)
G142556 NA non-coding upstream 44686 8016770 ~ 8016998 (+)
G142516 NA non-coding upstream 55424 8003190 ~ 8006260 (+)
G142580 NA non-coding downstream 59130 8131379 ~ 8131664 (+)
G142594 NA non-coding downstream 77576 8149825 ~ 8150579 (+)
G142610 NA non-coding downstream 96096 8168345 ~ 8168569 (+)
G142617 NA non-coding downstream 106821 8179070 ~ 8179281 (+)
G142625 NA non-coding downstream 114595 8186844 ~ 8188141 (+)
CI01000027_07947743_07951397 NA other upstream 109742 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 589970 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1103917 6951132 ~ 6957767 (+)
G141082 NA other upstream 1160761 6898411 ~ 6900923 (+)
G143033 NA other downstream 1656566 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010016 tmod4 coding NC_007127.7 CM002900.2 29650698 ~ 29684858 (+)