CI01000027_08033124_08037571


Basic Information

Item Value
gene id CI01000027_08033124_08037571
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8032971 ~ 8039234 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_08033124_08037571.mRNA
GTATAAATATCTAGACAGTTCTCGTTCTACGCTTCTGCCTAGACAACATACAATGTAGTTGATTTGAGTTAGTTTAAAATTAGAAAGGCGACGTTTCCTCTCAAATGCATCGTCGATATACTGGATTAAAGGCATTGATGTGAATTTGCAAAAATGTTCCCTGGAAGTAAAGTTTCAAACGACAACGCCTTTTGGCCATGCATTGGATTAACAGCTCTTAACGTCAACAGTTCTGGCGGGTTTGGTGGCAAGAGACTGGTAATGCCAGAGCGGAAACCCCAGAACCAGTTTACAGGGGACGGTCTCCAAGGCTCGGTACCATCCTCGCCTGGGTCGGATATCGAGGAAGTAGATGCTTACACGTCCCTTGCTGTGGAAACACGAGAAATTATTGACATTTTCTTAAAAAACTTTACTGGACTCCCTCATTCTAAAATGGGAAAAAAACAGGTTCTGTCAACGATGAAGAGGGTTGTGGAAAGTCTCGTGGTAAAGCACGAAATCGCTTACAAAGGTATGATTGCACGTCTGAATCTGGAGCAGAATGGAGAAGATGTGAGTTTCATCAAGACTCTGGCAACAGAAATCTTCAGCGATGGCATCACAAACTGGGGGCGAATTGCCAGCTTGCTGACTTTTGGGGCAATTGTGTGCAAGCATCAGAATGACAGAGGACTTAGCAAGTGTGTGACTCTGGTGGGGGAAGAGATCTCCTCCTATCTTCTCACAGCCCAGCGGGACTGGCTGCTCAAAAACAAAGCATGGATTGGCTTCGTGTCTGGTTACAGGCCATCCGTGGGGTCTAATGAGGACTATGGTAATGACACACACAGGGCCTCACCTGATCCTCCAGCTCGCTGCAGAAGCACCTGCTGTGGTTACCTGAGCCAGGAGGCACATGGCTGTTAAACTCAGTGGAATACAGGTAAAGCCATGTGATAACACAAGTTTTAAGTATCACACAACAGACATCTTCAATGAGGGGTTAAAAGCCACTCATTTGTGATAGATTTATTTGCTTGGCCAGTGTTTTTGTGGATCTTTTACTGATGAAGGTTCTTTAAAATAAGGGAAATAAACTGACAAAGTGTTATGGAACTGTAATATGGTCAAGGGTAAAACTACTTCATAGCCATGCTGTTATTCAAAAAACATTCGAACGCCCATCAGCCAATCAGAATCAAACATTCTAGACAGCTGCGTTATACAACAGACTACTTAGTGTGGATAAATATCCAGTGGAACATAATGCTAGTTAATGTAAAGAATGAAGTACAGATAAATACTGAGTGTACAAACAATGTGCATATCCTGCTTTTGTTATTAGAACATTGACTGGAACAAAAGGAGGAGGAGAATGCATTATTGTCTAAAGCAGGGGTTTTCAAGCAGGGGTCCAGGGAATGCTATGGGGTCCGTGGAAAAGTTTAGACAAAAACAGTGCATATATACATATATAATTATAACAAATTAACTAGATAAACAAATAAAATTGATTAAAATTACAAGAATATTGATATAAATAAAAACCTTTGATTAAAGTAAATAACATTTTTAAAATATAAATATATAGATAACTTTTGATTTAAATAATACATATAACAGTACAATACAAAATACACAATGCAACACAATCGACACATTTATAATATTTTTTTCCCCCACAGTATTAATTAGGTTTTTATACTTATAAATATATAACTGCCTTATAAATTTCAAGATGGGGGTCCCTCGCATGAGGATGATAATATTTGATCAAATTTGGCATTGAAAAAAAATTGAAAACCCCTGGTCTGTATGAAACAGGCAGAAAATACCTATAGAATATTTGGTGTTTAAATAAAAATTGTATTATCTTAAGTAAAAATTATTTTCTTTTTTATAATCTGTATTGTTATTTTTTATTCTTGTTCTTAGTTTGAGATCTAATTACTGTATGTGATTTTTTTATGTGTTTTTTTATTGTGTGAAGCATAGTGTTTCTTTGGCCATAAAGCATTGTCCAAATGATCCCATCACATGTTCTGCAGGGATGCTAGTTGCTCATAGCGATCATTTACCCTGCTGTTTAACATTATCAAGGTTTTATGTATGTATGTATTTATTTATTCTTTTTTGTATTAAGTTCCCAGTGTTTAGATTTTATGTTTTGGTAATCTTGGCGAAAGAACATTTCTGCTAGTCATGGCAGGTCATTGCTGGATCATCAGGTCTGTGACCTTTCCCCTATAGCATGATTCCACGAGGGAAAACACGTCACTTCCACATTCTGTCATAAAGATAAAAGCTCTAAAATCAAAAAAAATAATTGCCAACCTCAAGTGACTATTTTTAATGTGTAATTTATTTATTTAATAAATATTTCAAATGTATAATCTTCTGGTTAAATGGGTAAACAGTTCCTAGTGGTCTATGTTAGTCAGCATATCCTTGGAAAAAGATTGTCCTGACTCACTGTTGTCTTTGAGTTGCCTGACCTGTGTCTTGCAATTAGTGTTCCTTGCTTTATGTACACAAACGCATGAGCAAAGAGTCACATGTGGTAGGCTGTCGACTGGTATTAACCATGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_08033124_08037571.mRNA True 2572 mRNA 0.37 3 8032971 8039234

Neighbor

gene id symbol gene type direction distance location
CI01000027_08026500_08029412 ENSAB, ENSA coding upstream 3540 8025788 ~ 8032041 (+)
CI01000027_07981813_07992141 NA coding upstream 40699 7981637 ~ 7992272 (+)
CI01000027_07973865_07979402 NA coding upstream 53508 7973695 ~ 7979463 (+)
CI01000027_07962587_07964571 NA coding upstream 68366 7962587 ~ 7964605 (+)
CI01000027_07954714_07957187 NA coding upstream 75522 7954714 ~ 7957449 (+)
CI01000027_08052743_08058881 VPS72 coding downstream 13444 8052678 ~ 8059107 (+)
CI01000027_08064283_08072145 TMOD4 coding downstream 22450 8061684 ~ 8072249 (+)
CI01000027_08078236_08079316 LYSMD1 coding downstream 39002 8078236 ~ 8079950 (+)
CI01000027_08255251_08264629 NA coding downstream 215839 8255073 ~ 8264897 (+)
CI01000027_08276000_08284306 NA coding downstream 236565 8275799 ~ 8292755 (+)
G142559 NA non-coding upstream 10712 8021941 ~ 8022259 (+)
G142557 NA non-coding upstream 15302 8017440 ~ 8017669 (+)
G142556 NA non-coding upstream 15973 8016770 ~ 8016998 (+)
G142516 NA non-coding upstream 26711 8003190 ~ 8006260 (+)
G142550 NA non-coding upstream 30617 8002056 ~ 8002354 (+)
G142518 NA non-coding downstream 7010 8046244 ~ 8050580 (+)
G142580 NA non-coding downstream 92145 8131379 ~ 8131664 (+)
G142594 NA non-coding downstream 110591 8149825 ~ 8150579 (+)
G142610 NA non-coding downstream 129111 8168345 ~ 8168569 (+)
G142617 NA non-coding downstream 139836 8179070 ~ 8179281 (+)
CI01000027_07947743_07951397 NA other upstream 81029 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 561257 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1075204 6951132 ~ 6957767 (+)
G141082 NA other upstream 1132048 6898411 ~ 6900923 (+)
G143033 NA other downstream 1689581 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010014 NA non-coding NC_007127.7 CM002900.2 29591119 ~ 29600668 (+)